View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5032-Insertion-9 (Length: 259)
Name: NF5032-Insertion-9
Description: NF5032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5032-Insertion-9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 53351969 - 53351718
Alignment:
| Q |
8 |
ataatcaccttcgaccagatgtgaagaaggggccgtttagtgaagaagaaaaaaccaaagtctttcagttctttaacaactttggtgaattcaaatggtc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
53351969 |
ataatcaccttcgaccagatgtgaagaaggggccgtttagtgaagaagaaaaaaccaaagtctttcggttctttaacaactttggtgaattcaaatggtc |
53351870 |
T |
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| Q |
108 |
taagctggctcaagaggttttatcttcatgctttacttcttttctttttgttttatttgaaatatttatctatccttctacaattgcaaccatattcgtt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53351869 |
taagctggctcaagaggttttatcttcatgctttacttcttttctttttgttttatttgaaatatttatctatccttctacaattgcaaccatattcgtt |
53351770 |
T |
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| Q |
208 |
agatcacacattgtgcaatttagggtttaccacttgtgttataccttgttga |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53351769 |
agatcacacattgtgcaatttagggtttaccacttgtgttataccttgttga |
53351718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 26033566 - 26033391
Alignment:
| Q |
8 |
ataatcaccttcgaccagatgtgaagaaggggccgtttagtgaagaagaaaaaaccaaagtctttcagttctttaacaactttggtgaattcaaatggtc |
107 |
Q |
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|||||||||| | |||||||||||| ||||| || ||||||||||||||| |||| ||||| ||| ||||| ||| || | |||||||||||||||||| |
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| T |
26033566 |
ataatcacctgcaaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaaaagtttttgtgttctataaaaagtatggtgaattcaaatggtc |
26033467 |
T |
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| Q |
108 |
taagctggctcaagagg---ttttatcttcatgctttacttcttttctttttgttttatttgaaatatttatctatc |
181 |
Q |
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| T |
26033466 |
taagctggctgaggaggtaatttcttattcatgctttacttctttt-actttctttaatttgaaatattgatctatc |
26033391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 38180690 - 38180807
Alignment:
| Q |
8 |
ataatcaccttcgaccagatgtgaagaaggggccgtttagtgaagaagaaaaaaccaaagtctttcagttctttaacaactttggtgaattcaaatggtc |
107 |
Q |
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|||||||||| | |||||||||||| ||||| || |||||||||||||||||| | ||||| ||| |||||| || || | |||||||||||||||||| |
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| T |
38180690 |
ataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtc |
38180789 |
T |
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| Q |
108 |
taagctggctcaagaggt |
125 |
Q |
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| T |
38180790 |
taagctggctcatgaggt |
38180807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 38190441 - 38190324
Alignment:
| Q |
8 |
ataatcaccttcgaccagatgtgaagaaggggccgtttagtgaagaagaaaaaaccaaagtctttcagttctttaacaactttggtgaattcaaatggtc |
107 |
Q |
| |
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|||||||||| | |||||||||||| ||||| || |||||||||||||||||| | ||||| ||| |||||| || || | |||||||||||||||||| |
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| T |
38190441 |
ataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtc |
38190342 |
T |
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| Q |
108 |
taagctggctcaagaggt |
125 |
Q |
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|||||||||||| ||||| |
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| T |
38190341 |
taagctggctcatgaggt |
38190324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 38207914 - 38208031
Alignment:
| Q |
8 |
ataatcaccttcgaccagatgtgaagaaggggccgtttagtgaagaagaaaaaaccaaagtctttcagttctttaacaactttggtgaattcaaatggtc |
107 |
Q |
| |
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|||||||||| | |||||||||||| ||||| || |||||||||||||||||| | ||||| ||| |||||| || || | |||||||||||||||||| |
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| T |
38207914 |
ataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtc |
38208013 |
T |
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| Q |
108 |
taagctggctcaagaggt |
125 |
Q |
| |
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|||||||||||| ||||| |
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| T |
38208014 |
taagctggctcatgaggt |
38208031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 38217666 - 38217549
Alignment:
| Q |
8 |
ataatcaccttcgaccagatgtgaagaaggggccgtttagtgaagaagaaaaaaccaaagtctttcagttctttaacaactttggtgaattcaaatggtc |
107 |
Q |
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|||||||||| | |||||||||||| ||||| || |||||||||||||||||| | ||||| ||| |||||| || || | |||||||||||||||||| |
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| T |
38217666 |
ataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtc |
38217567 |
T |
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| Q |
108 |
taagctggctcaagaggt |
125 |
Q |
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|||||||||||| ||||| |
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| T |
38217566 |
taagctggctcatgaggt |
38217549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 38456050 - 38456167
Alignment:
| Q |
8 |
ataatcaccttcgaccagatgtgaagaaggggccgtttagtgaagaagaaaaaaccaaagtctttcagttctttaacaactttggtgaattcaaatggtc |
107 |
Q |
| |
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|||||||||| | |||||||||||| ||||| || |||||||||||||||||| | ||||| ||| |||||| || || | |||||||||||||||||| |
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| T |
38456050 |
ataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtc |
38456149 |
T |
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| Q |
108 |
taagctggctcaagaggt |
125 |
Q |
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|||||||||||| ||||| |
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| T |
38456150 |
taagctggctcatgaggt |
38456167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 38447182 - 38447258
Alignment:
| Q |
34 |
aaggggccgtttagtgaagaagaaaaaaccaaagtctttcagttctttaacaactttggtgaattcaaatggtctaa |
110 |
Q |
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||||| || |||||| |||||||| ||| |||||||||||||| ||| || ||||||| ||||||||||||||| |
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| T |
38447182 |
aagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtttggtggattcaaatggtctaa |
38447258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 38342533 - 38342621
Alignment:
| Q |
88 |
tttggtgaattcaaatggtctaagctggctcaagaggt---tttatcttcatgctttactt----cttttctttttgttttatttgaaa |
169 |
Q |
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|||||||| ||||||||||||||| |||||| ||||| ||| | |||||||||||||| ||||||||||| |||||||||||| |
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| T |
38342533 |
tttggtgagttcaaatggtctaagatggctctcgaggtatatttttgttcatgctttacttcttccttttctttttcttttatttgaaa |
38342621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 38446726 - 38446814
Alignment:
| Q |
88 |
tttggtgaattcaaatggtctaagctggctcaagaggt---tttatcttcatgctttactt----cttttctttttgttttatttgaaa |
169 |
Q |
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|||||||| ||||||||||||||| |||||| ||||| ||| | |||||||||||||| ||||||||||| |||||||||||| |
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| T |
38446726 |
tttggtgagttcaaatggtctaagatggctctcgaggtatatttttgttcatgctttacttcttccttttctttttcttttatttgaaa |
38446814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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