View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5032_high_10 (Length: 234)

Name: NF5032_high_10
Description: NF5032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5032_high_10
NF5032_high_10
[»] chr7 (1 HSPs)
chr7 (7-223)||(7977615-7977830)
[»] chr4 (16 HSPs)
chr4 (57-212)||(659757-659911)
chr4 (161-223)||(8187091-8187153)
chr4 (80-125)||(53761692-53761737)
chr4 (73-125)||(644964-645016)
chr4 (73-113)||(1495835-1495875)
chr4 (73-113)||(1517412-1517452)
chr4 (73-125)||(1600553-1600605)
chr4 (90-125)||(3438496-3438531)
chr4 (7-56)||(659957-660006)
chr4 (182-223)||(8184051-8184092)
chr4 (73-125)||(553613-553665)
chr4 (80-132)||(558625-558677)
chr4 (162-222)||(1519143-1519203)
chr4 (73-113)||(1533903-1533943)
chr4 (89-125)||(7225812-7225848)
chr4 (73-125)||(55908641-55908693)
[»] chr5 (2 HSPs)
chr5 (68-125)||(32267606-32267663)
chr5 (75-125)||(41901453-41901503)
[»] chr8 (3 HSPs)
chr8 (158-224)||(18315270-18315336)
chr8 (73-125)||(28246208-28246260)
chr8 (7-51)||(18314737-18314781)
[»] chr6 (5 HSPs)
chr6 (79-125)||(6402994-6403040)
chr6 (73-125)||(11936188-11936240)
chr6 (73-125)||(11948168-11948220)
chr6 (183-224)||(28935085-28935126)
chr6 (94-134)||(9411477-9411517)
[»] chr3 (2 HSPs)
chr3 (94-224)||(51120827-51120956)
chr3 (73-125)||(1657381-1657433)
[»] chr2 (2 HSPs)
chr2 (73-125)||(1037577-1037629)
chr2 (89-127)||(45245014-45245052)
[»] scaffold0807 (1 HSPs)
scaffold0807 (89-144)||(1393-1448)
[»] scaffold0014 (1 HSPs)
scaffold0014 (77-125)||(88950-88998)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 7977830 - 7977615
Alignment:
Q  7 gattgtttccctttgcttgaagaactcgacctaagtaacctcaaattgatagatggctatggcatttctgaagaaggtatcggtcaagttttaaggagat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7977830 gattgtttccctttgcttgaagaactcgacctaagtaacctcaaattgatagatggctatggcatttctgaagaaggtattggtcaagttttaaggagat 7977731  T
Q  107 gttgtaacattagacatttaaccctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcac 206  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  7977730 gttgtaacattagacatttaaacctagcctgttgttcaagggtgaatcta-cgtggaatgaaattcgacgtttgcaaactcgaggctttgaacttgtcac 7977632  T
Q  207 atacaacagttgatgat 223  Q
    |||||||||||||||||    
T  7977631 atacaacagttgatgat 7977615  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 57 - 212
Target Start/End: Complemental strand, 659911 - 659757
Alignment:
Q  57 agatggctatggcatttctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacatttaaccctagcctgttgttcaagggtgagtcta 156  Q
    ||||||| |||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| |||||| | ||||||| |||||||| | ||  |||    
T  659911 agatggcaatggcatttctgaagaagatattggtcaaattttaaggagatgttgtaacattagatatttaaacttagcctgctgttcaagagggaagcta 659812  T
Q  157 ccgtggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaa 212  Q
     || | ||| || || ||||||  |||||| |||| ||||||||||||||||||||    
T  659811 -cgagtaataaattttgaagttcccaaactagaggtgttgaacttgtcacatacaa 659757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 8187091 - 8187153
Alignment:
Q  161 ggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgat 223  Q
    |||||||| || ||| ||| |||||| |||| |||||||||||||||||||| ||||||||||    
T  8187091 ggaatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgat 8187153  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 53761692 - 53761737
Alignment:
Q  80 aaggtatcggtcaagttttaaggagatgttgtaacattagacattt 125  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||    
T  53761692 aaggtatttgtcaagttttaaggagatgttgtaacattaggcattt 53761737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 645016 - 644964
Alignment:
Q  73 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacattt 125  Q
    |||||||||||||| | ||| ||||||| || |||||||||||||||||||||    
T  645016 tctgaagaaggtatggttcatgttttaatgatatgttgtaacattagacattt 644964  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 1495835 - 1495875
Alignment:
Q  73 tctgaagaaggtatcggtcaagttttaaggagatgttgtaa 113  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  1495835 tctgaagaaggtattggtcatgttttaaggagatgttgtaa 1495875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 1517412 - 1517452
Alignment:
Q  73 tctgaagaaggtatcggtcaagttttaaggagatgttgtaa 113  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  1517412 tctgaagaaggtatcgatcatgttttaaggagatgttgtaa 1517452  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 1600605 - 1600553
Alignment:
Q  73 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacattt 125  Q
    ||||||||||||||  |||||||||||||||||| || ||| |||||||||||    
T  1600605 tctgaagaaggtatttgtcaagttttaaggagattttctaaaattagacattt 1600553  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 3438496 - 3438531
Alignment:
Q  90 tcaagttttaaggagatgttgtaacattagacattt 125  Q
    |||||||||||||||||||||||| |||||||||||    
T  3438496 tcaagttttaaggagatgttgtaagattagacattt 3438531  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 660006 - 659957
Alignment:
Q  7 gattgtttccctttgcttgaagaactcgacctaagtaacctcaaattgat 56  Q
    |||||||||||||||||||| ||||||||| | ||||||| || ||||||    
T  660006 gattgtttccctttgcttgacgaactcgacttcagtaaccgcatattgat 659957  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 8184051 - 8184092
Alignment:
Q  182 aaactcgaggcgttgaacttgtcacatacaacagttgatgat 223  Q
    ||||| |||| |||||||||||||||||||| ||||||||||    
T  8184051 aaactagaggtgttgaacttgtcacatacaagagttgatgat 8184092  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 553665 - 553613
Alignment:
Q  73 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacattt 125  Q
    |||||||||| | | | ||| |||||||||| |||||||||||||||||||||    
T  553665 tctgaagaagctgttgttcatgttttaaggacatgttgtaacattagacattt 553613  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 558677 - 558625
Alignment:
Q  80 aaggtatcggtcaagttttaaggagatgttgtaacattagacatttaacccta 132  Q
    |||||||  |||| |||||||||| ||||| ||||||||||||||| ||||||    
T  558677 aaggtatttgtcatgttttaaggacatgttctaacattagacatttgacccta 558625  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 1519143 - 1519203
Alignment:
Q  162 gaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatga 222  Q
    ||||||| || ||||||  |||||| |||| ||||||||||||||||||||  ||||||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatga 1519203  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 1533903 - 1533943
Alignment:
Q  73 tctgaagaaggtatcggtcaagttttaaggagatgttgtaa 113  Q
    ||||||||||||||  |||| ||||||||||||||||||||    
T  1533903 tctgaagaaggtattagtcatgttttaaggagatgttgtaa 1533943  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 7225812 - 7225848
Alignment:
Q  89 gtcaagttttaaggagatgttgtaacattagacattt 125  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  7225812 gtcaagttttacggagatgttgtaagattagacattt 7225848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 55908641 - 55908693
Alignment:
Q  73 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacattt 125  Q
    ||||||||||||||  || ||||| ||||||||||||||||  ||||||||||    
T  55908641 tctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacattt 55908693  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 32267663 - 32267606
Alignment:
Q  68 gcatttctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacattt 125  Q
    |||| |||||||||||||||| |||| ||||||||| |||||||||||||||||||||    
T  32267663 gcatatctgaagaaggtatcgttcaatttttaaggatatgttgtaacattagacattt 32267606  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 41901453 - 41901503
Alignment:
Q  75 tgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacattt 125  Q
    |||||||||||| | ||||||||||||||  ||||||||||||||||||||    
T  41901453 tgaagaaggtattgttcaagttttaaggatgtgttgtaacattagacattt 41901503  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 18315270 - 18315336
Alignment:
Q  158 cgtggaatgaaattcgaagtttgcaaactcgaggcgttgaacttgtcacatacaacagttgatgatg 224  Q
    ||||||||||| ||  |||||  |||||| |||| |||||||||||||||||||| |||||||||||    
T  18315270 cgtggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatg 18315336  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 28246208 - 28246260
Alignment:
Q  73 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacattt 125  Q
    |||||||||||||| | ||| ||||||| || |||||||||||||||||||||    
T  28246208 tctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacattt 28246260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 18314737 - 18314781
Alignment:
Q  7 gattgtttccctttgcttgaagaactcgacctaagtaacctcaaa 51  Q
    ||||||||||||||||| |||||||||||||| ||| ||| ||||    
T  18314737 gattgtttccctttgctcgaagaactcgaccttagttaccccaaa 18314781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 6403040 - 6402994
Alignment:
Q  79 gaaggtatcggtcaagttttaaggagatgttgtaacattagacattt 125  Q
    ||||||||  ||||||||||||||||||||||||||||||| |||||    
T  6403040 gaaggtatttgtcaagttttaaggagatgttgtaacattaggcattt 6402994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 11936188 - 11936240
Alignment:
Q  73 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacattt 125  Q
    |||||||||||||| | ||| ||||||| || |||||||||||||||||||||    
T  11936188 tctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacattt 11936240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 11948168 - 11948220
Alignment:
Q  73 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacattt 125  Q
    |||||||||||||| | ||| ||||||| || |||||||||||||||||||||    
T  11948168 tctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacattt 11948220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 28935126 - 28935085
Alignment:
Q  183 aactcgaggcgttgaacttgtcacatacaacagttgatgatg 224  Q
    ||||||||| |||||||||||||||||||| |||||| ||||    
T  28935126 aactcgaggtgttgaacttgtcacatacaagagttgacgatg 28935085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 9411517 - 9411477
Alignment:
Q  94 gttttaaggagatgttgtaacattagacatttaaccctagc 134  Q
    ||||||||||||||| |||||||||||||||| | ||||||    
T  9411517 gttttaaggagatgtggtaacattagacatttgaacctagc 9411477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 224
Target Start/End: Original strand, 51120827 - 51120956
Alignment:
Q  94 gttttaaggagatgttgtaacattagacatttaaccctagcctgttgttcaagggtgagtctaccgtggaatgaaattcgaagtttgcaaactcgaggcg 193  Q
    |||||| |||||||||||||||||||||| || | | |  || |||||||||| ||||  || |  ||||||||| || ||||||  |||| | |||| |    
T  51120827 gttttatggagatgttgtaacattagacacttgaacttcaccggttgttcaagagtgaaactgca-tggaatgaactttgaagttctcaaattggaggtg 51120925  T
Q  194 ttgaacttgtcacatacaacagttgatgatg 224  Q
    ||||||||||| ||||||| |||||||||||    
T  51120926 ttgaacttgtcgcatacaagagttgatgatg 51120956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 1657433 - 1657381
Alignment:
Q  73 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacattt 125  Q
    |||||||||||||| | ||| ||||||| || |||||||||||||||||||||    
T  1657433 tctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacattt 1657381  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 1037577 - 1037629
Alignment:
Q  73 tctgaagaaggtatcggtcaagttttaaggagatgttgtaacattagacattt 125  Q
    ||||||||||||||  || ||||||||||||||||||||||  ||||||||||    
T  1037577 tctgaagaaggtatttgtgaagttttaaggagatgttgtaaggttagacattt 1037629  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 45245014 - 45245052
Alignment:
Q  89 gtcaagttttaaggagatgttgtaacattagacatttaa 127  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  45245014 gtcatgttttaaggagatgttgtaacattaggcatttaa 45245052  T

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Target: scaffold0807 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 1393 - 1448
Alignment:
Q  89 gtcaagttttaaggagatgttgtaacattagacatttaaccctagcctgttgttca 144  Q
    ||||||||||||||||||||| ||| ||||||||||| | | ||||||| ||||||    
T  1393 gtcaagttttaaggagatgttataagattagacatttgaacttagcctggtgttca 1448  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 88998 - 88950
Alignment:
Q  77 aagaaggtatcggtcaagttttaaggagatgttgtaacattagacattt 125  Q
    |||||||||| | |||  ||||||||||||||||||| |||||||||||    
T  88998 aagaaggtattgatcagattttaaggagatgttgtaagattagacattt 88950  T

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