View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5032_low_3 (Length: 315)
Name: NF5032_low_3
Description: NF5032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5032_low_3 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 315
Target Start/End: Original strand, 41143285 - 41143590
Alignment:
| Q |
10 |
aatatatgtaaggttgttaataatacttaccaaacatgggactccaagtctggttaataacatccaagcaaactgaaccagagctgaatatcagagaaaa |
109 |
Q |
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| T |
41143285 |
aatatatgtaaggttgttaataatacttaccaaacatgggactccaagtctggttaataacatccaagcaaactgaaccagagctgaatatcagagaaaa |
41143384 |
T |
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| Q |
110 |
agattttaatcagctgttgagtatatcaattcgtttgagcaacagccaatagaggttccaaggaggacaatggcgttgcttcaatatgatattaaacaag |
209 |
Q |
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| T |
41143385 |
atattttaatcagctgttgagtatatcaattcgtttgagcaacagccaatagaggttccaaggaggacaatggtgttgcttcaatatgatattaaacaag |
41143484 |
T |
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| Q |
210 |
gaagctgttttttattataagaaaatgttattaagttagtagttatgttaatttctaaggtttgaacactgaactttattcttaaaactacaactgtgtt |
309 |
Q |
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| T |
41143485 |
gaagctgttttttattataagaaaatgttattaagttagtagttatgttaatttctaaggtttgaaccctgaactttcttcttaaaactacatctgtgtc |
41143584 |
T |
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| Q |
310 |
ccctac |
315 |
Q |
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| T |
41143585 |
ccctac |
41143590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 298
Target Start/End: Original strand, 41151279 - 41151359
Alignment:
| Q |
218 |
tttttattataagaaaatgttattaagttagtagttatgttaatttctaaggtttgaacactgaactttattcttaaaact |
298 |
Q |
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| T |
41151279 |
ttttttttataggaaaatgctattaagttagtactcatgttcatttctagggtttgaacccttaacttacttcttaaaact |
41151359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 10359181 - 10359137
Alignment:
| Q |
232 |
aaatgttattaagttagtagttatgttaatttctaaggtttgaac |
276 |
Q |
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| T |
10359181 |
aaatgttaataagttagtagttatgttagtttttaagatttgaac |
10359137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 27 - 298
Target Start/End: Original strand, 32663172 - 32663441
Alignment:
| Q |
27 |
taataatacttaccaaacatgggactccaagtctggttaataacatccaagcaaactgaaccagagctgaatatcagagaaaaagattttaatcagctgt |
126 |
Q |
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| T |
32663172 |
taataatgcttaccaaacatgggactccaagtctggttaataacttctaaacaaactgaaccagacctgaatatcaaagaaaaagatttttatcagctgt |
32663271 |
T |
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| Q |
127 |
tgagtatatcaattcgtttgagcaacagccaatagaggttccaaggaggacaatggcgttgcttcaatatgatattaaacaaggaagctgttttttatta |
226 |
Q |
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| T |
32663272 |
tgagtttagcaatttatttgagcaacagccaatagaggttccatggaggacaatggtgttgcttaaatatgatagaaaacaaggaagctattttt--tta |
32663369 |
T |
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| Q |
227 |
taagaaaatgttattaagttagtagttatgttaatttctaaggtttgaacactgaactttattcttaaaact |
298 |
Q |
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| T |
32663370 |
caagaaaacgttatcaagttagtagttgtgttagtttataaggtttgaaccgtgaactttcatcttaaaact |
32663441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 32637546 - 32637689
Alignment:
| Q |
19 |
aaggttgttaataatacttaccaaacatgggactccaagtctggttaataacatccaagcaaactgaaccagagctgaatatcagagaaaaagattttaa |
118 |
Q |
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| T |
32637546 |
aaggttgttaataatgcttaccaaacataggattccaagtctggctaataacatctaaacaaactgaaccagacctgaatatcaaagaaaaaggttttga |
32637645 |
T |
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| Q |
119 |
tcagctgttgagtatatcaattcgtttgagcaacagccaataga |
162 |
Q |
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| T |
32637646 |
tcagctgttgagtgtagcaatttatttgagcaacagccaataga |
32637689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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