View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5032_low_4 (Length: 272)
Name: NF5032_low_4
Description: NF5032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5032_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 100 - 258
Target Start/End: Original strand, 41620257 - 41620423
Alignment:
| Q |
100 |
ttataagtactaacttcatttgagaaacaaatagaataatatactctagatatattagtatta--------actttcttcccatgagctctacaaaagaa |
191 |
Q |
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| T |
41620257 |
ttataagtactaactttatttgagaaacaaatagaataatatactctagatatattagtattaagtgattaactttcttcccatgagctctacaaaagaa |
41620356 |
T |
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| Q |
192 |
attaattaacaataatacttgatataacttgcatttgctcaacattatcttcaacaaatagaataat |
258 |
Q |
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| T |
41620357 |
attaataaacaataatacttgatataacttgcatttgctcaacattatcttcaacaaatagaataat |
41620423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 41619816 - 41619898
Alignment:
| Q |
25 |
aaccaccatgaaagaaaagcaccttcaccattttaatactatcaacaataccacttggttgacatttatctttaattataagta |
108 |
Q |
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| T |
41619816 |
aaccaccatgaaagaaaagcaccttcaccattttaatactatcaacaatactac-tggttgacatttatctttaattataagta |
41619898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 23239409 - 23239373
Alignment:
| Q |
35 |
aaagaaaagcaccttcaccattttaatactatcaaca |
71 |
Q |
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| T |
23239409 |
aaaggaaaacaccttcaccattttaatactatcaaca |
23239373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 23250495 - 23250459
Alignment:
| Q |
35 |
aaagaaaagcaccttcaccattttaatactatcaaca |
71 |
Q |
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|||| ||| |||||||||||||||||||||||||||| |
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| T |
23250495 |
aaaggaaaacaccttcaccattttaatactatcaaca |
23250459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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