View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5032_low_6 (Length: 252)
Name: NF5032_low_6
Description: NF5032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5032_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 9855160 - 9855382
Alignment:
| Q |
1 |
ttatttatgtaatgatttactatgttcggtttaaaataagtgccaccttacatattaannnnnnncaagtaactgtaacatttgnnnnnnntatttcagg |
100 |
Q |
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| T |
9855160 |
ttatttatgtaatgatttactatgttcggtttaaaataagtgccaccttacatatt---ttttttcaaataactgtaacatttgaaaaaaatatttcagg |
9855256 |
T |
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| Q |
101 |
ttacttttaatttccaatatacaattttaattattttttcttcaattgtactctttaattaacactacatgcatcaaccttaagttgttattctccgttt |
200 |
Q |
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| T |
9855257 |
ttatttttaatttccaatatacaattt-aattatttttt------------tctttaattaacactacatgcatcaatcttaagttgttattctccattt |
9855343 |
T |
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| Q |
201 |
agatttatgataacatgaatacatgatagctaataagaa |
239 |
Q |
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| T |
9855344 |
agatttatgataacatgaatacatgatagctaataagaa |
9855382 |
T |
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