View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5032_low_8 (Length: 245)

Name: NF5032_low_8
Description: NF5032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5032_low_8
NF5032_low_8
[»] chr1 (5 HSPs)
chr1 (54-232)||(8142221-8142397)
chr1 (121-232)||(7501069-7501177)
chr1 (1-64)||(8142145-8142208)
chr1 (7-63)||(4931654-4931710)
chr1 (121-184)||(7498499-7498560)
[»] chr2 (1 HSPs)
chr2 (4-113)||(9130957-9131066)
[»] chr5 (1 HSPs)
chr5 (54-111)||(22209802-22209859)
[»] chr4 (2 HSPs)
chr4 (55-103)||(1530418-1530466)
chr4 (54-104)||(1492294-1492344)
[»] chr3 (2 HSPs)
chr3 (54-113)||(54256587-54256646)
chr3 (5-37)||(41514446-41514478)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 8142221 - 8142397
Alignment:
Q  54 tccgctatttgtcatattggatttt-tggcaatccaatattttccacgatccgatattaatcgataggaattacatatcaagaatagatgaagtacaatc 152  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8142221 tccgctatttgtcatattggattttttggcaatccaatattttccacgatccgatattaatagataggaattacatatcaagaatagatgaagtacaatc 8142320  T
Q  153 ttcaagccatacatagtcactgtgagttaaggtattatgattggctaagaagtgtgcctcatttatttatattcattttg 232  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  8142321 ttcaagccatacatagtcactgtgagttaagg---tatgattggctaagaagtgtgcctcatttatttatattcattttg 8142397  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 232
Target Start/End: Complemental strand, 7501177 - 7501069
Alignment:
Q  121 aattacatatcaagaatagatgaagtacaatcttcaagccatacatagtcactgtgagttaaggtattatgattggctaagaagtgtgcctcatttattt 220  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||    ||| ||||||||||  ||||||||||||||||    
T  7501177 aattacatgtcaagaatacatgaagtacattcttcaagccatacatagtcattgtgagttaagg---catgcttggctaagatatgtgcctcatttattt 7501081  T
Q  221 atattcattttg 232  Q
     |||| ||||||    
T  7501080 gtattaattttg 7501069  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8142145 - 8142208
Alignment:
Q  1 tgttagcatgctttattttatacataattatttatttgaacagttttgcagtttccgctatttg 64  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8142145 tgttcgcatgctttattttatacataattatttatttgaacagttttgcagtttccgctctttg 8142208  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 4931710 - 4931654
Alignment:
Q  7 catgctttattttatacataattatttatttgaacagttttgcagtttccgctattt 63  Q
    |||||||||||||||| |||||||||||||| ||||| | ||||| |||| ||||||    
T  4931710 catgctttattttatatataattatttatttcaacaggtgtgcagcttccactattt 4931654  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 7498560 - 7498499
Alignment:
Q  121 aattacatatcaagaatagatgaagtacaatcttcaagccatacatagtcactgtgagttaagg 184  Q
    |||||||||||||||||| ||| ||||   |||||| |||||||||||||||| ||||||||||    
T  7498560 aattacatatcaagaataaatgtagtat--tcttcatgccatacatagtcactttgagttaagg 7498499  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 9130957 - 9131066
Alignment:
Q  4 tagcatgctttattttatacataattatttatttgaacagttttgcagtttccgctatttgtcatattggatttttggcaatccaatattttccacgatc 103  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||  | || |||||| | |||||| | ||||||||| |||  ||||||||| ||||     
T  9130957 tagcatgctttattttatatataattatttatttgaaccgttttgtggcttacgctatgtatcatatcgaatttttggcgatctgatattttccgcgata 9131056  T
Q  104 cgatattaat 113  Q
    ||||||||||    
T  9131057 cgatattaat 9131066  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 22209859 - 22209802
Alignment:
Q  54 tccgctatttgtcatattggatttttggcaatccaatattttccacgatccgatatta 111  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||  |||| |||||||    
T  22209859 tccgctatttgtcatatcggatttttggcgatccaatattttccgtgatcagatatta 22209802  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 1530418 - 1530466
Alignment:
Q  55 ccgctatttgtcatattggatttttggcaatccaatattttccacgatc 103  Q
    ||||||||||| |||||||||||||||| |||| ||| |||||||||||    
T  1530418 ccgctatttgttatattggatttttggcgatccgatactttccacgatc 1530466  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 1492294 - 1492344
Alignment:
Q  54 tccgctatttgtcatattggatttttggcaatccaatattttccacgatcc 104  Q
    |||||||||||| |||| ||||||||||| |||| ||||||||| ||||||    
T  1492294 tccgctatttgttatatcggatttttggcgatcctatattttccgcgatcc 1492344  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 54256646 - 54256587
Alignment:
Q  54 tccgctatttgtcatattggatttttggcaatccaatattttccacgatccgatattaat 113  Q
    |||||||||| |||||   |||||||||| |||| ||||||||||||||||| |||||||    
T  54256646 tccgctatttctcatagcagatttttggcgatccgatattttccacgatccgctattaat 54256587  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 41514478 - 41514446
Alignment:
Q  5 agcatgctttattttatacataattatttattt 37  Q
    |||||||||||||||||| ||||||||||||||    
T  41514478 agcatgctttattttatatataattatttattt 41514446  T

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