View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5033-Insertion-1 (Length: 926)
Name: NF5033-Insertion-1
Description: NF5033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5033-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 106 - 570
Target Start/End: Complemental strand, 26578523 - 26578059
Alignment:
| Q |
106 |
tatcctcaaggtccacgctcgtctaaacctagcgagtatgtctgattattttagtttggtttaatgactcttttggcaaaataaattcaatcgagagatg |
205 |
Q |
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| T |
26578523 |
tatcctcaaggtccacgctcgtctaaacctagcgagtatgtctgattattttagtttggtttaatgactctttgggcaaaataaattcaatcgagagatg |
26578424 |
T |
|
| Q |
206 |
agaatatgaattgaatgacgtgcacgagtggggtggatggagttagggccacccactgtgtccatgaagcaagctgaccaggtgctgcaggctgacatat |
305 |
Q |
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| T |
26578423 |
agaatatgaattgaatgacgtgcacgagtggggtggatggagttagggccacccactgtgtccatgaagcaagctgaccaggtgctgcaggctgacatat |
26578324 |
T |
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| Q |
306 |
actcacagcgtagcatagcatagaatggcctgtgccctagccctactcatagacgttacaggatgatgacgtgatatattgtagattaaaatgattggtt |
405 |
Q |
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| T |
26578323 |
actcacagcgtagcatagcatagaatggcctgtgccctagccctactcatagacgttacaggatgatgacgtgatatattgtagattaaaatgattggtt |
26578224 |
T |
|
| Q |
406 |
gatctatatattttgaacgtaagaggctatggtctggcaatgaattaatagtatactgggtttcgtgaactcaagccccaaggctattgtctggaggaat |
505 |
Q |
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| T |
26578223 |
gatctatatattttgaacgtaagaggctatggtctggcaatgaattaatagtatactgggtttcgtgaactcaagccccaaggctattgtctggaggaat |
26578124 |
T |
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| Q |
506 |
taattgaagaaaaggaatagggatgtgggacccatctatctagctggccattacatagtggtagt |
570 |
Q |
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| T |
26578123 |
taattgaagaaaaggaatagggatgtgggatccatctatctagctggccattacatagtggtagt |
26578059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 570 - 917
Target Start/End: Complemental strand, 26578009 - 26577659
Alignment:
| Q |
570 |
tgatggatcacaagttgacatttgatttcactgtacacacgaacacactgttttgaacactccacaatcccacaatcttttgtccattcattgaaacatc |
669 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26578009 |
tgatggatcacaagttgacatttgatttcactgtacacacgaacacactgttttgaacactccacaatcccacactcttttgtccattcattgaaacatc |
26577910 |
T |
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| Q |
670 |
ggatcacacaatttgcaaagggtaatatcagaatagaaataaaatgtgcat--gtgtttcaaatttaattcggaacggttggaatttaattttgagacat |
767 |
Q |
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| T |
26577909 |
ggatcacacaatttgcaaagggtaatatcagaatagaaataaaatgtgcatatgtgtttcaaatttaattcggaacggttggaatttaattttgagacat |
26577810 |
T |
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| Q |
768 |
atcgatatctcttattttagaatgagaaaaattaagatataaggcttgcgggtgatgaatggcgtatgtatgtgttagcagttaaatacgagactgagaa |
867 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26577809 |
attgatatctcttattttagaatgagaaaaattaagatataaggcttgcgggtgatggatggcgtatgtatgtgttagcagttaaatacgaaactgagaa |
26577710 |
T |
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| Q |
868 |
agggcgaattaacaga-ggggttggttgtcttctgtgtggtggaaagactt |
917 |
Q |
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| T |
26577709 |
agggcgaattaacagagggggttggttgtcttctgtgtggtggaaagactt |
26577659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 26578618 - 26578560
Alignment:
| Q |
12 |
gcaaccttactcaaaacattcttccttctcatcactccttacaaagttaatgccgttat |
70 |
Q |
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| T |
26578618 |
gcaaccttactcaaaacattcttccttctcatcactccttacaaagttaatgccgttat |
26578560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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