View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5033-Insertion-2 (Length: 815)
Name: NF5033-Insertion-2
Description: NF5033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5033-Insertion-2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 748; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 8 - 815
Target Start/End: Original strand, 35706536 - 35707343
Alignment:
| Q |
8 |
catatatcagtataacatttgcttttctatgagaannnnnnnngtcttgcagttacccttacttgccaattaattactacatgaggaagtctatatacca |
107 |
Q |
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| T |
35706536 |
catatatcagtataacatttgcttttctatgagaattgtttttgtcttgcagttacccttacttgccaattaattactacataaggaattctatatacca |
35706635 |
T |
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| Q |
108 |
aagaacctcaaaactagctcttataacatataaatacattattgagcttctgattggttatacctctaaatatcaatgctcacacaagaattgctccaac |
207 |
Q |
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| T |
35706636 |
aagaacctcaaaactagctcttataatatataaatacattattgagcttctgattggttatacctctaaatatcaatgctcacacaagaattgctccaac |
35706735 |
T |
|
| Q |
208 |
tttccttctccatctctaactccctgatgtgataaatcagctttgttaagtaaattggtgtgcagttgatttaaaatttaaatacccttcatcgatagtc |
307 |
Q |
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| T |
35706736 |
tttccttctccatctctaactccctgatgtgataaatcagctttgttaagtaaattggtgtgcagttgatttaaaatttaaatacccttcatcgatagtc |
35706835 |
T |
|
| Q |
308 |
aatatgtaagcagccacaaagcaattctttacatttgtcaataacagaaaatggtcacccccacttcaagttattcctccaacaccaaagtatctgtttt |
407 |
Q |
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| T |
35706836 |
aatatgtaggcagccacaaagcaattctttacatttgtcaataacagaaaatggtcacccccacttcaagttattcctccaacaccaaagtatctgtttt |
35706935 |
T |
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| Q |
408 |
aaacctccacatggacctagtcttgctcaccaaaaattattacaagagcaagctccattaaggaagtggtggaatctcatgttatccctcacaataattt |
507 |
Q |
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| T |
35706936 |
aaacctccacatggacctagtcttgctcaccaaaaattattacaagagcaagctccattaaggaagtggtggaatctcatgttatccctcacaataattt |
35707035 |
T |
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| Q |
508 |
tccttcctataagtttggatgcgccgcacattacaatatggcaatcctcacatatcctaaggtttttcataatctttatagtggagccagcatctgtact |
607 |
Q |
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| T |
35707036 |
tccttcctgtaagtttggatgcgccgcacattacaatatggcaatcctcacatatcctaaggtttttcataatctttatagtggagccagcatctgtact |
35707135 |
T |
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| Q |
608 |
taacagtccatatgccaaagcgagtttttcactatgagacacaagtaaacacctctttccttcatcatcaatatcatattgcacagaatttagttttggt |
707 |
Q |
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| T |
35707136 |
taacagtccatatgccaaagcgagtttttcactatgagacacaagtaaacacctctttccttcatcatcaatatcatatggcacagaatttagttttggt |
35707235 |
T |
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| Q |
708 |
tgatatccggcacacttcagtcgctgcaaaagatcatctaacaccttctttatctcattaatttctggatgtttcacatcaccagcaaagaactcgtgaa |
807 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35707236 |
tgatatccagtacacttcagtcgctgcaaaagatcatctaacgccttctttatctcattaatttctggatgtttcacatcaccagcaaagaactcgtgaa |
35707335 |
T |
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| Q |
808 |
taatacca |
815 |
Q |
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|||||||| |
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| T |
35707336 |
taatacca |
35707343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 755 - 814
Target Start/End: Original strand, 42112382 - 42112441
Alignment:
| Q |
755 |
ctttatctcattaatttctggatgtttcacatcaccagcaaagaactcgtgaataatacc |
814 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||| | |||| |||||| |
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| T |
42112382 |
ctttatcttattaatttctggatgttatacatcaccagcaaagaacacatgaacaatacc |
42112441 |
T |
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