View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5033-Insertion-3 (Length: 791)
Name: NF5033-Insertion-3
Description: NF5033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5033-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 706; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 8 - 781
Target Start/End: Original strand, 49085267 - 49086045
Alignment:
| Q |
8 |
ctcatcgcactagccaaagagaagcagctctaacaaagtttcgactgaagcgaaaagacagatgctatgacaaaaaggtactacaaccaccatgctatca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49085267 |
ctcatcgcactagccaaagagaagcagctctaacaaagtttcgactgaagcgaaaagacagatgctatgacaaaaaggtactgcaaccaccatgctatca |
49085366 |
T |
|
| Q |
108 |
ctacttttgagaagaaccactctagaaatatttttatcatagggaacaatttgagttgatttatcaatatggtattagtgtttttagtaagtttggaaac |
207 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49085367 |
ctacttttgagaagaaccactctagaaatatttttgtcatagggaacaatttgagttgatttatcaatatggtatcagtgtttttagtaagtttggaaac |
49085466 |
T |
|
| Q |
208 |
tcctactgtgtg-ttttagtaatctcaaacatgtctaggctgacattattaaagatatttcagatgctcattggtcaaatttattttacaggtccgatat |
306 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49085467 |
tcctactgtgtggttttagtaatctcaaacatgtctaggctgacattattaaagatatttcagatgctcattgctcaaatttattttacaggtccgatat |
49085566 |
T |
|
| Q |
307 |
gaaagccgaaaaagacaggcagagaaccgcccccgggtgaaagggcagtttgttcgccaagtacagggtgaagttccagtagctgaaaccggaggctact |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
49085567 |
gaaagccgaaaaagacaggcagagaaccgcccccgggtgaaagggcagtttgttcgccaagtacagggtgaagttccggtagctgaaaccagaggctact |
49085666 |
T |
|
| Q |
407 |
gagattgttttgtttcaagttacctttattattgatttacagtctgacttgaacactaatttgactcaacaatggttaactgtagtgtaggtctagtgaa |
506 |
Q |
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| T |
49085667 |
gagattgttttgtttcaagttaccttcattattgatttacagtctgacttgaacactaatttgactcaacaatggttaactgtagtgtaggtctagtgaa |
49085766 |
T |
|
| Q |
507 |
atcaaattgtttttaatagcatttttagtgctttctgtcggcttgtttgttaattatattgactcattgactgtctcctacaaatttaggattgtaatta |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49085767 |
atcaaattgtttttaatagcatttttagtgctttctgtcggcttgtttgttaattacattgactcattgactgtctcctacaaatttaggattgtaatta |
49085866 |
T |
|
| Q |
607 |
ttatgtagtgattgatttgaattttttatcgtacctcg----tgtaaatcttacttgttagggctgtggtttaactagtatgcttatgtctaataacgat |
702 |
Q |
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||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
49085867 |
ttatgtagtgattgatttgaattttttattgtacctcgtttatttaaatcttacttgttagggctgtggtttaactagcatgcttatgtctaataacgat |
49085966 |
T |
|
| Q |
703 |
gaggccaagatcctgcttttagctggaagaattgcatttgcaggaatgatttcgtccgttcttacattatttctgtgcc |
781 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49085967 |
gaagccaagatcctgcttttagctggaagaattgcatttgcaggaatgatttcgtccgttcttacattatttctgtgcc |
49086045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 8896887 - 8896805
Alignment:
| Q |
8 |
ctcatcgcactagccaaagagaagcagctctaacaaagtttcgactgaagcgaaaagacagatgctatgacaaaaaggtacta |
90 |
Q |
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|||||||| || | |||||||||||||||||||||||||||||| | ||||||||||| ||||||| || |||||||||||| |
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| T |
8896887 |
ctcatcgctctcgtcaaagagaagcagctctaacaaagtttcgattaaagcgaaaagagagatgcttcgagaaaaaggtacta |
8896805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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