View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5033-Insertion-5 (Length: 548)
Name: NF5033-Insertion-5
Description: NF5033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5033-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 7 - 548
Target Start/End: Original strand, 28405353 - 28405895
Alignment:
| Q |
7 |
aaaacggaggttcgttttgtttccctttctggaggggcgcgccatttttgtggtgttcgagaggataatcatgtgattgaatgttggggtaatttgaatt |
106 |
Q |
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| T |
28405353 |
aaaacggaggttcgttttgtttccctttctggaggggcgcgtcatttttgtggtgttcgagaggataatcatgtgattgaatgttggggtaatttgaatt |
28405452 |
T |
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| Q |
107 |
catctttggttcctaaaggttatggctttatggcaattgcttcttctgattatactacttgtggtataagggaaactgatcttcttttagattgttggtt |
206 |
Q |
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| T |
28405453 |
catctttggttcctaaaggttatggctttatggcaattgcttcttctgattatactacttgtggtataagggaagctgatcttcttttagattgttggtt |
28405552 |
T |
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| Q |
207 |
ggtcaacgcttcaaagcctgattttgacccacctttagagctttcaagtcctggtctttgtaggtcaagttcttgtgaagctaatgaatttgatttcaat |
306 |
Q |
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| T |
28405553 |
ggtcaacgcttcaaagcctgattttgacccacctttagagctttcaagtcctggtctttgtaggtcaagttcttgtgaagctaatgaatttgatttcaat |
28405652 |
T |
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| Q |
307 |
gttagtgttcttaatcaaccagatttgacaagtttatgtgttakacaagatttgaggatttgttcaccttgtgggtataattgttcacaaggtttctttt |
406 |
Q |
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| T |
28405653 |
gttagtgttcttaatcaaccagatttgacaagtttatgtgttagacaagatttgaggatttgttcaccttgtgggtataattgttcacaaggtttctttt |
28405752 |
T |
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| Q |
407 |
tgtctagtccttgtacacaaaattctgatagagtttgcacagcctgttctctttgtcagaacasttcttgtttgagtgtttgtaaacttc-ttcttcaac |
505 |
Q |
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| T |
28405753 |
tgtctagtccttgcacacaaaattctgatagagtttgcacagcctgttctctttgtcagaacagttcttgtttgaatgtttgtaaacttcattcttcaaa |
28405852 |
T |
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| Q |
506 |
tggcttttggcattggcatcatattcgtagatgggttctaata |
548 |
Q |
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| T |
28405853 |
tgggttttggcattggcatcatattcgtagatgggttctaata |
28405895 |
T |
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