View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5033-Insertion-6 (Length: 525)

Name: NF5033-Insertion-6
Description: NF5033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5033-Insertion-6
NF5033-Insertion-6
[»] chr2 (8 HSPs)
chr2 (8-188)||(38561666-38561845)
chr2 (373-525)||(38562030-38562180)
chr2 (80-165)||(38581281-38581366)
chr2 (256-305)||(38561913-38561962)
chr2 (257-305)||(16646967-16647015)
chr2 (257-293)||(30257800-30257836)
chr2 (257-293)||(36186630-36186666)
chr2 (257-304)||(17271269-17271316)
[»] chr8 (8 HSPs)
chr8 (257-305)||(22486603-22486651)
chr8 (257-305)||(26835602-26835650)
chr8 (257-305)||(43872580-43872628)
chr8 (257-300)||(22930394-22930437)
chr8 (259-297)||(13236257-13236295)
chr8 (261-297)||(9191271-9191307)
chr8 (257-305)||(13580366-13580414)
chr8 (257-305)||(21347512-21347560)
[»] chr3 (6 HSPs)
chr3 (257-305)||(15670991-15671039)
chr3 (256-297)||(33510113-33510154)
chr3 (257-305)||(11383666-11383714)
chr3 (257-305)||(11365120-11365168)
chr3 (257-305)||(27538793-27538841)
chr3 (269-305)||(33290783-33290819)
[»] chr4 (8 HSPs)
chr4 (257-302)||(55147681-55147726)
chr4 (257-305)||(23870120-23870168)
chr4 (257-297)||(36071573-36071613)
chr4 (257-305)||(7102215-7102263)
chr4 (257-297)||(7853368-7853408)
chr4 (257-305)||(29118545-29118593)
chr4 (257-297)||(6137757-6137797)
chr4 (259-291)||(41442475-41442507)
[»] chr7 (7 HSPs)
chr7 (257-305)||(21828234-21828281)
chr7 (261-305)||(3940659-3940703)
chr7 (257-305)||(30095747-30095795)
chr7 (257-300)||(3351153-3351196)
chr7 (262-305)||(35812693-35812736)
chr7 (257-293)||(21129347-21129383)
chr7 (257-293)||(40351787-40351823)
[»] chr6 (5 HSPs)
chr6 (257-305)||(33344894-33344942)
chr6 (257-305)||(35121955-35122003)
chr6 (257-297)||(34573202-34573242)
chr6 (257-305)||(31787888-31787936)
chr6 (257-293)||(34329843-34329879)
[»] chr5 (7 HSPs)
chr5 (257-303)||(32257695-32257741)
chr5 (257-297)||(502875-502915)
chr5 (257-305)||(20870703-20870751)
chr5 (257-297)||(3193538-3193578)
chr5 (257-297)||(12263662-12263702)
chr5 (257-289)||(18600260-18600292)
chr5 (269-305)||(18626743-18626779)
[»] chr1 (6 HSPs)
chr1 (257-295)||(49762468-49762506)
chr1 (269-305)||(15103055-15103091)
chr1 (257-297)||(33735766-33735806)
chr1 (257-305)||(22667203-22667251)
chr1 (269-305)||(23897910-23897946)
chr1 (257-289)||(38742467-38742499)
[»] scaffold0527 (2 HSPs)
scaffold0527 (257-293)||(1718-1754)
scaffold0527 (257-293)||(9781-9817)


Alignment Details
Target: chr2 (Bit Score: 129; Significance: 2e-66; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 38561666 - 38561845
Alignment:
Q  8 atatgtatattcatgtgaggaataaatcggcattcattgcttgaacnnnnnnnntaaaatcggcattcgttgcataactctttgttgtattggctagcta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||| |||||||||||||||||||||||||||||||    
T  38561666 atatgtatattcatgtgaggaataaatcggcattcattgcttgaacaaaaaaaa-aaaatcggcattcattgcataactctttgttgtattggctagcta 38561764  T
Q  108 ggacagttgttgatataaaacattttacatttagagtgtactataccacatgtagagtcaggggtggccctgagcaccgaa 188  Q
    |||| |||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  38561765 ggactgttgttgatataaaacattttacacttagagtgtattataccacaggtagagtcaggggtggccctgagcaccgaa 38561845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 373 - 525
Target Start/End: Original strand, 38562030 - 38562180
Alignment:
Q  373 ggcacaatatgacattcatatatgttcannnnnnnnngttgtttaggttacaagtaaccaaaagtaaagtaccaaaaattttaggacaccaaaaatctaa 472  Q
    ||||||||||||||||||||||||||||         |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  38562030 ggcacaatatgacattcatatatgttcattttttt--gttgtttaggttacaaataaccaaaagtagagtaccaaaaattttaggacaccaaaaatctaa 38562127  T
Q  473 agttgattggcatttttggtgccctggcacaatatgacattcatatatgttca 525  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38562128 agttgattggcattttgggtgccctggcacaatatgacattcatatatgttca 38562180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 38581281 - 38581366
Alignment:
Q  80 cataactctttgttgtattggctagctaggacagttgttgatataaaacattttacatttagagtgtactataccacatgtagagt 165  Q
    |||||||||||||||||||||||| |  |||| ||||| ||| ||||||||||||||   |||||||||||||||||| |||||||    
T  38581281 cataactctttgttgtattggctaccagggactgttgtagatgtaaaacattttacacaaagagtgtactataccacaagtagagt 38581366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 38561913 - 38561962
Alignment:
Q  256 cattgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  38561913 cattgaaaatatttttttagagaactttcattataaatgaatattgtgca 38561962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 16647015 - 16646967
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    ||||||||||||||||||||||| ||| ||||||||||||| |||||||    
T  16647015 attgaaaatatctttttagagaattttaattataaatgaatcttgtgca 16646967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 30257836 - 30257800
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaat 293  Q
    ||||||||||| |||||||||||||||||||||||||    
T  30257836 attgaaaatatatttttagagaactttgattataaat 30257800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 36186666 - 36186630
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaat 293  Q
    ||||||||||| |||||||||||||||||||||||||    
T  36186666 attgaaaatatatttttagagaactttgattataaat 36186630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 304
Target Start/End: Complemental strand, 17271316 - 17271269
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgc 304  Q
    ||||||||||| |||||||  |||||||||||||||||||| ||||||    
T  17271316 attgaaaatatatttttagcaaactttgattataaatgaatcttgtgc 17271269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 22486651 - 22486603
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  22486651 attgaaaatatcattttagagaactttgattataaatgaatcttgtgca 22486603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 26835650 - 26835602
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  26835650 attgaaaatatatttttagagaactttgattataaatgaatcttgtgca 26835602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 43872580 - 43872628
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    |||| |||||| |||||| |||||||||||||||||||||| |||||||    
T  43872580 attgtaaatatatttttaaagaactttgattataaatgaatcttgtgca 43872628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 300
Target Start/End: Original strand, 22930394 - 22930437
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatatt 300  Q
    |||||||| || |||||||| |||||||||||||||||||||||    
T  22930394 attgaaaaaatatttttagataactttgattataaatgaatatt 22930437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 297
Target Start/End: Original strand, 13236257 - 13236295
Alignment:
Q  259 tgaaaatatctttttagagaactttgattataaatgaat 297  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  13236257 tgaaaatatatttttagagaactttgattataaacgaat 13236295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 9191271 - 9191307
Alignment:
Q  261 aaaatatctttttagagaactttgattataaatgaat 297  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  9191271 aaaatatatttttagagaactatgattataaatgaat 9191307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 13580414 - 13580366
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    ||||||||||| |||||| | ||||||| ||||||||||||||| ||||    
T  13580414 attgaaaatatatttttaaataactttggttataaatgaatattttgca 13580366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 21347560 - 21347512
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    ||||||||||| |||||| | || ||||||||||||||||| |||||||    
T  21347560 attgaaaatatatttttaaataaatttgattataaatgaatcttgtgca 21347512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 15670991 - 15671039
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  15670991 attgaaaatatctttttagaaaactttgattataaatgaatcttgtgca 15671039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 256 - 297
Target Start/End: Complemental strand, 33510154 - 33510113
Alignment:
Q  256 cattgaaaatatctttttagagaactttgattataaatgaat 297  Q
    |||||||||||| ||||||||||||||| |||||||||||||    
T  33510154 cattgaaaatatatttttagagaactttaattataaatgaat 33510113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 11383666 - 11383714
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    |||||||| || |||||||| ||||||||||||||||||||||| ||||    
T  11383666 attgaaaaaatatttttagataactttgattataaatgaatattttgca 11383714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 11365120 - 11365168
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    |||||||| || |||||| | ||||||||||||||||||||||| ||||    
T  11365120 attgaaaagatatttttaaataactttgattataaatgaatattttgca 11365168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 27538841 - 27538793
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    ||||||||||| |||||| | ||||||||||| ||||||||||| ||||    
T  27538841 attgaaaatatatttttaaataactttgattagaaatgaatattttgca 27538793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 33290783 - 33290819
Alignment:
Q  269 tttttagagaactttgattataaatgaatattgtgca 305  Q
    |||||||||||||||||| |||||||||| |||||||    
T  33290783 tttttagagaactttgatcataaatgaatcttgtgca 33290819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 55147726 - 55147681
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgt 302  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  55147726 attgaaaatgtctttttagagaactttgattataaatgaatcttgt 55147681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 23870120 - 23870168
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  23870120 attgaaaatatatttttagataactttgattataaatgaatattttgca 23870168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 36071613 - 36071573
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaat 297  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  36071613 attgaaaatatatttttagagaactttgattataaatgaat 36071573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 7102215 - 7102263
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    ||||||||||  ||||||||||||||| ||||||||||||| |||||||    
T  7102215 attgaaaatacatttttagagaacttttattataaatgaatcttgtgca 7102263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 7853368 - 7853408
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaat 297  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  7853368 attgaaaatatatttttagaaaactttgattataaatgaat 7853408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 29118545 - 29118593
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    ||||||||||| |||||| |||||||||||||| |||||||||| ||||    
T  29118545 attgaaaatatgtttttaaagaactttgattatgaatgaatattttgca 29118593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 6137757 - 6137797
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaat 297  Q
    ||||||||||| | |||||||||||||||||| ||||||||    
T  6137757 attgaaaatatatatttagagaactttgattagaaatgaat 6137797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 291
Target Start/End: Complemental strand, 41442507 - 41442475
Alignment:
Q  259 tgaaaatatctttttagagaactttgattataa 291  Q
    ||||||||||||||||||||| |||||||||||    
T  41442507 tgaaaatatctttttagagaagtttgattataa 41442475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 21828234 - 21828281
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||    
T  21828234 attgaaaata-ctttttagagaactttgattataaatgaatcttgtgca 21828281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 3940703 - 3940659
Alignment:
Q  261 aaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    |||||||||||||| |||||||||||||||||| ||| |||||||    
T  3940703 aaaatatctttttaaagaactttgattataaataaatcttgtgca 3940659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 30095795 - 30095747
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    |||||||| || |||||||| ||||||||||||||||||||||| ||||    
T  30095795 attgaaaaaatatttttagataactttgattataaatgaatattttgca 30095747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 300
Target Start/End: Original strand, 3351153 - 3351196
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatatt 300  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||    
T  3351153 attgaaattatatttttagataactttgattataaatgaatatt 3351196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 305
Target Start/End: Original strand, 35812693 - 35812736
Alignment:
Q  262 aaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||    
T  35812693 aaatatatttttagataactttgattataaatgaatattttgca 35812736  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 21129383 - 21129347
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaat 293  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  21129383 attgaaaatatttttttagagaattttgattataaat 21129347  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 40351823 - 40351787
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaat 293  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  40351823 attgaaaatatatttttaaagaactttgattataaat 40351787  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 33344894 - 33344942
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  33344894 attgaaaatatatttttagataactttgattataaatgaatattttgca 33344942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 35122003 - 35121955
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  35122003 attgaaaatatatttttagataactttgattataaatgaatattttgca 35121955  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 34573242 - 34573202
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaat 297  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  34573242 attgaaaatatatttttaaagaactttgattataaatgaat 34573202  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 31787888 - 31787936
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    ||||||||||| ||| |||| |||||| |||||||||||||||| ||||    
T  31787888 attgaaaatatatttgtagataactttaattataaatgaatattttgca 31787936  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 34329879 - 34329843
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaat 293  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  34329879 attgaaaatatatttttagagaactttgcttataaat 34329843  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 303
Target Start/End: Complemental strand, 32257741 - 32257695
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtg 303  Q
    |||||||||||  |||||||||||||||||||||||||||| |||||    
T  32257741 attgaaaatatacttttagagaactttgattataaatgaattttgtg 32257695  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 502875 - 502915
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaat 297  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  502875 attgaaaatatatttttagagaactttgattatgaatgaat 502915  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 20870703 - 20870751
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||| ||||    
T  20870703 attgataatatatttttagataactttgattataaatgaatattctgca 20870751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 3193578 - 3193538
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaat 297  Q
    ||||||||||| |||||| |||||||||||||| |||||||    
T  3193578 attgaaaatatgtttttaaagaactttgattatgaatgaat 3193538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 12263702 - 12263662
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaat 297  Q
    ||||||||||| |||||| ||||||||||||||| ||||||    
T  12263702 attgaaaatatatttttaaagaactttgattatagatgaat 12263662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 18600260 - 18600292
Alignment:
Q  257 attgaaaatatctttttagagaactttgattat 289  Q
    ||||||||||| |||||||||||||||||||||    
T  18600260 attgaaaatatgtttttagagaactttgattat 18600292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 18626743 - 18626779
Alignment:
Q  269 tttttagagaactttgattataaatgaatattgtgca 305  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  18626743 ttttttgagaactttgattataaatgaatcttgtgca 18626779  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 295
Target Start/End: Complemental strand, 49762506 - 49762468
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatga 295  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  49762506 attgaaaatatatttttagagaactttgattataaatga 49762468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 15103091 - 15103055
Alignment:
Q  269 tttttagagaactttgattataaatgaatattgtgca 305  Q
    ||||||||||||||||||||||||||||| |||||||    
T  15103091 tttttagagaactttgattataaatgaatcttgtgca 15103055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 33735806 - 33735766
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaat 297  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  33735806 attgaaaatatatttttagacaactttgattataaatgaat 33735766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 22667251 - 22667203
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaatgaatattgtgca 305  Q
    ||||||||| | ||||| || ||||||||||||||||||||||| ||||    
T  22667251 attgaaaatttatttttggataactttgattataaatgaatattttgca 22667203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 23897946 - 23897910
Alignment:
Q  269 tttttagagaactttgattataaatgaatattgtgca 305  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  23897946 tttttagataactttgattataaatgaatattttgca 23897910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 38742467 - 38742499
Alignment:
Q  257 attgaaaatatctttttagagaactttgattat 289  Q
    ||||||||||| |||||||||||||||||||||    
T  38742467 attgaaaatatatttttagagaactttgattat 38742499  T

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Target: scaffold0527 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 1718 - 1754
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaat 293  Q
    ||||||||||| |||||||||||||||||||||||||    
T  1718 attgaaaatatatttttagagaactttgattataaat 1754  T

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Target: scaffold0527; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 9781 - 9817
Alignment:
Q  257 attgaaaatatctttttagagaactttgattataaat 293  Q
    ||||||||||| |||||||||||||||||||||||||    
T  9781 attgaaaatatatttttagagaactttgattataaat 9817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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