View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5033-Insertion-8 (Length: 289)
Name: NF5033-Insertion-8
Description: NF5033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5033-Insertion-8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 4686597 - 4686717
Alignment:
| Q |
169 |
gggaattcaagaaattttacagtgtattggcaaattgaatatcagcttcaagagctttaagagaatccttgaaagacttgcgcatctctcccatcaccat |
268 |
Q |
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| T |
4686597 |
gggaattcaagaaattttacagtgtattggcaaattgaatatcagcttcaagagctttaagagaatccttgaaagacttgcgcatctctcccatcaccat |
4686696 |
T |
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| Q |
269 |
aatcactttttcttcttcttc |
289 |
Q |
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| T |
4686697 |
aatcactttttcttcttcttc |
4686717 |
T |
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Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 4686439 - 4686490
Alignment:
| Q |
7 |
accttgaatatgaacaaacagaacacagattactccatatttcagcaatcat |
58 |
Q |
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| T |
4686439 |
accttgaatatgaacaaacagaacacagattactccatatttcagcaatcat |
4686490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 24968425 - 24968493
Alignment:
| Q |
185 |
ttacagtgtattggcaaattgaatatcagcttcaagagctttaagagaatccttgaaagacttgcgcat |
253 |
Q |
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| T |
24968425 |
ttacagtgtattagcaaattgaatatcagcttcaagagctttgagagaatccttgaaagactttcgcat |
24968493 |
T |
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