View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5033_high_2 (Length: 579)
Name: NF5033_high_2
Description: NF5033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5033_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 17 - 573
Target Start/End: Original strand, 1347015 - 1347583
Alignment:
| Q |
17 |
aaaaacaagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagacct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1347015 |
aaaaacaagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagacct |
1347114 |
T |
|
| Q |
117 |
tgaatgatatgcaagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaactga |
216 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1347115 |
tgaatgatttgcaagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaactga |
1347214 |
T |
|
| Q |
217 |
caaattagggatttgtgcaaaggaaggtagaccgcaaaactaaagagggaaaaagttcagaggtagaactaactcaagcaatggaacaagaggtaatggc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1347215 |
caaattagggatttgtgcaaaggaaggtagaccgcaaaactaaagagggcaaaagttcagaggtagaactaactcaagcaatggaactagaggtaatggc |
1347314 |
T |
|
| Q |
317 |
tctgtgcaaaataaagcagtgtcatgaatgcaagaaatatggaca------------cagccacaaattgttctattcaaccaacgtggttacgaaaaat |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1347315 |
tctgtgcaaaataaagcagtgtcatgaatgcaagaaatatggacataatatatatatcagcaacaaattgttctattcaagcaacgtggttacgaaaaat |
1347414 |
T |
|
| Q |
405 |
gctaagcaatgcatatatcgcgtagttattaagtgcaccctagaattgttggaccattgatttgtataaggagacaaaacctatacttttcaaaccatca |
504 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1347415 |
gctaagcaaagcatatatcgcgtagttattaagtgtaccctagaattgttggaccattgatttgtataaggagacaaaacctatacttttcaaaccatca |
1347514 |
T |
|
| Q |
505 |
aatccaatagtagcaggtatagaaaattaagaaaaaaccaagtatacatctaggaaatattcatctcac |
573 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
1347515 |
aatccaatagtagcaggtatagaaaattaagaaaacaccaagtatatatctaggaaatattcatatcac |
1347583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 137 - 249
Target Start/End: Complemental strand, 8675916 - 8675805
Alignment:
| Q |
137 |
ttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaactgacaaattagggatttgtgcaa |
236 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||| ||||||||||||||| | ||| || || |||||||||||| ||||||||| ||||||||||| || |
|
|
| T |
8675916 |
ttggagtcgcatgaaatgttaatgagtgaaagg-tcaagtgacacaatcgaacaaacatttacagctccaacaaatctgacaaataagggatttgtgtaa |
8675818 |
T |
|
| Q |
237 |
aggaaggtagacc |
249 |
Q |
| |
|
||||||||||||| |
|
|
| T |
8675817 |
aggaaggtagacc |
8675805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 19807748 - 19807579
Alignment:
| Q |
23 |
aagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatg |
122 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || ||| ||||||||| ||| ||||||| ||||||| ||||||||| | | || ||||| ||||| |
|
|
| T |
19807748 |
aagtcatggagaaaattgtgctaacactaacaagctgattcaattacgcattagcagcaattgaagagtc-aaaagatctgaacacagcgacctagaatg |
19807650 |
T |
|
| Q |
123 |
atatgcaagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagca |
194 |
Q |
| |
|
|| ||||| || ||||| ||||||||||||||| ||| | |||| |||||||||||||||| |||||||| |
|
|
| T |
19807649 |
atttgcaatcacccttgcagtcacatgaaatgcaaataagtgaaa-agtcaagtgacacaatcgatcaagca |
19807579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 507
Target Start/End: Complemental strand, 8675798 - 8675681
Alignment:
| Q |
391 |
tggttacgaaaaatgctaagcaatgcatatatcgcgtagttattaagtgcaccctagaattgttggacc-attgatttgtataaggagacaaaacctata |
489 |
Q |
| |
|
||||||| |||||||||||||| ||||||| || ||||||| |||||||||||||||||| |||| ||||||||||||||||||| || ||| || |
|
|
| T |
8675798 |
tggttacagaaaatgctaagcaaaacatatattgcatagttatcaagtgcaccctagaattggaagaccgtttgatttgtataaggagaccaagcctgta |
8675699 |
T |
|
| Q |
490 |
cttttcaaaccatcaaat |
507 |
Q |
| |
|
| |||||||| |||||| |
|
|
| T |
8675698 |
ttgttcaaaccgtcaaat |
8675681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 9619623 - 9619569
Alignment:
| Q |
199 |
aagctccaacaaaactgacaaattagggatttgtgcaaaggaaggtagaccgcaa |
253 |
Q |
| |
|
|||||||| |||| ||||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
9619623 |
aagctccagcaaatctgacaaataagtgatttgtgcaaaggagggtagaccgcaa |
9619569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 361 - 473
Target Start/End: Complemental strand, 9619439 - 9619327
Alignment:
| Q |
361 |
acagccacaaattgttctattcaaccaacgtggttacgaaaaatgctaagcaatgcatatatcgcgtagttattaagtgcaccctagaattgttggacca |
460 |
Q |
| |
|
||||||||||||| || || |||| ||| ||||||| ||||||||||||| |||| || || ||||||||||||||||||| |||| ||||| |
|
|
| T |
9619439 |
acagccacaaattattttactcaagcaatttggttacagaaaatgctaagcataacatacattgcacagttattaagtgcaccctataattagaagacca |
9619340 |
T |
|
| Q |
461 |
ttgatttgtataa |
473 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
9619339 |
tttatttgtataa |
9619327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 427 - 498
Target Start/End: Complemental strand, 15785176 - 15785105
Alignment:
| Q |
427 |
tagttattaagtgcaccctagaattgttggaccattgatttgtataaggagacaaaacctatacttttcaaa |
498 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||| | |||||| |
|
|
| T |
15785176 |
tagttatcaagtgcaccctagaattggtggaccattaattggtataaggagaccaaacctatattgttcaaa |
15785105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 140 - 283
Target Start/End: Original strand, 32241112 - 32241253
Alignment:
| Q |
140 |
gagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaa-ctgacaaattagggatttgtgcaaag |
238 |
Q |
| |
|
||||||||||||||| |||||| |||||| || ||||||| |||| | ||| || || ||||||| ||||| |||||| || |||||||||||||||| |
|
|
| T |
32241112 |
gagtcacatgaaatgtgaatgagtgaaagg-tcgagtgacataatcgaccaaacatttaaagctccttcaaaatctgacagatgagggatttgtgcaaag |
32241210 |
T |
|
| Q |
239 |
gaaggtagaccgcaaaactaaagagggaaaaagttcagaggtaga |
283 |
Q |
| |
|
|| |||||||| | ||| |||||||| |||| || ||||||||| |
|
|
| T |
32241211 |
gatggtagacctc--aaccaaagagggcaaaactttagaggtaga |
32241253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 40031419 - 40031340
Alignment:
| Q |
17 |
aaaaacaagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaa |
96 |
Q |
| |
|
|||||||||||||| |||| ||| || | |||||| | |||||| ||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
40031419 |
aaaaacaagtcatggagaagattatgcaaacactatcaagatgattcaattacgccatagcagcatctcaagagtcaaaa |
40031340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University