View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5033_high_3 (Length: 560)

Name: NF5033_high_3
Description: NF5033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5033_high_3
NF5033_high_3
[»] chr7 (1 HSPs)
chr7 (1-560)||(49084480-49085039)


Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Original strand, 49084480 - 49085039
Alignment:
Q  1 agatagtatgtatttattttgtatatctgtctctaattggtttttattgtgttgagaactcttgttttgttgataaatcagtatcaataattgcaaacag 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  49084480 agatagtatgtatttattttgtatatctgtctctaattgggttttattgtgttgagaactcttgttttgttgataaatcagtatcaataattgtgtacag 49084579  T
Q  101 agtgcatttcaaatgaacattacagaatttccgacgttacttttaataaaattcccatttgcaggtatggcagcagtatggtgttgcagcctttatttcc 200  Q
    ||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49084580 agcacatttcaaatgaacattacagaatttccgacgttacttataataaaattcccatttgcaggtatggcagcagtatggtgttgcagcctttatttcc 49084679  T
Q  201 aacaaagagttctcatgaatcacaaaaattatctgaaaatataaacactactcatcattatgatggnnnnnnncaaaagcaggaaaatatcacatatctg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  49084680 aacaaagagttctcatgaatcacaaaaattatctgaaaatataaacactactcatcattatgatggaaaaaaacaaaagcaggaaaatatcacatatctg 49084779  T
Q  301 gtgattggtcagtctgggcaagttgatacaaaatgtcaacttgaattctttccagccacaggggccacttccgacaataagtctatggaacatgataacg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  49084780 gtgattggtcagtctgggcaagttgatacaaaatgtcaacttgaattctttccagccacaggggccacttccgataataagtctatggaacataataacg 49084879  T
Q  401 ttttacattctatgttcaacgcacaatcagggatgcatcccacttggacaccaaaatcagtgttccaaaaagagagttctccatttcccacaagtatttc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49084880 ttttacattctatgttcaacgcacaatcagggatgcatcccacttggacaccaaaatcagtgttccaaaaagagagttctccatttcccacaagtatttc 49084979  T
Q  501 ctcccattccaatcctaaaagtcagaactcagaacctcatcactggtcggatgatgccac 560  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49084980 ctcccattccaatcctaaaagccagaactcagaacctcatcactggtcggatgatgccac 49085039  T

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