View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5033_high_4 (Length: 430)
Name: NF5033_high_4
Description: NF5033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5033_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 9 - 413
Target Start/End: Original strand, 47687856 - 47688260
Alignment:
| Q |
9 |
agcagagaggagcacactacatgcaggctcagcagatgacacaacaacaacaactaatggctgcacgttcctcccttttatttgcacagcaacagcagca |
108 |
Q |
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| T |
47687856 |
agcagggaggagcacactacatgcaggctcagcagatgacacaacaacaacaactaatggctgcacgttcctcccttttatttgcacagcaacagcagca |
47687955 |
T |
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| Q |
109 |
gcaaccttactcagcccttcaacagcaccaacttggaggcggtggaacttcaggactacacatgatgcaaagcgaagcctgtagcaatatgaacgtggga |
208 |
Q |
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| T |
47687956 |
gcaaccttactcagcccttcaacagcaccaacttggaggcggtggaacttcaggactacacatgatgcaaagcgaagcctgtagcaatatgaacgtggga |
47688055 |
T |
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| Q |
209 |
ggaggtagtagctcaacattgggttctggtggtgggtttcctgacttcatccgcggtggaggagagggtttgcacagaagtcttattggaggtagtggca |
308 |
Q |
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| T |
47688056 |
ggaagtagtagctcaacattgggttctggtggtgggtttcctgacttcatccgcggtggaggagagggtttgcacagaagtcttattggaggtagtggca |
47688155 |
T |
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| Q |
309 |
agcaacaagagattgggatgaattcttcatctgatcaaggtcgaggcggcggtggtgatggcggcgaaaacctttacctcaaatcttctgatgatgggaa |
408 |
Q |
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| T |
47688156 |
agcaacaagagattgggatgagttcttcatctgatcaaggtcgaggcggcggtggtgatggcggcgaaaacctttacctcaaatcttctgatgatgggaa |
47688255 |
T |
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| Q |
409 |
ctagt |
413 |
Q |
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| T |
47688256 |
ctagt |
47688260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 413
Target Start/End: Complemental strand, 35836358 - 35836306
Alignment:
| Q |
361 |
tggtgatggcggcgaaaacctttacctcaaatcttctgatgatgggaactagt |
413 |
Q |
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| T |
35836358 |
tggtgatggcggcgaaacactttacctgaaatcttctggtgatgggaattagt |
35836306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 35836645 - 35836602
Alignment:
| Q |
35 |
gctcagcagatgacacaacaacaacaactaatggctgcacgttcctc |
81 |
Q |
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| T |
35836645 |
gctcagcagatgacacaacaacaat---taatggctgcacgttcctc |
35836602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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