View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5033_high_6 (Length: 345)
Name: NF5033_high_6
Description: NF5033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5033_high_6 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 170 - 345
Target Start/End: Original strand, 4587473 - 4587642
Alignment:
| Q |
170 |
atagttcatttttatttaaaatcactctcatttcaatctattacaaaatctggaaaaataaccatcaagagaaaaacaagaaaggaaatggaaacatggt |
269 |
Q |
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| T |
4587473 |
atagttcatttttatttaaaatcactctcatt-caatctattacaaaatctggaaaaataaccatcaagagaaaaacaagaaatgacatggaaacatggt |
4587571 |
T |
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| Q |
270 |
tggtgactgaccttaccgtacgagagaaaaagttggcaagagaagcaccccaacctccaacaccaaaggattcttc |
345 |
Q |
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| T |
4587572 |
tggtga-----cttaccgtacgagagaaatagttggcaaaagaagcaccccatcctccaacaccaaaggattcttc |
4587642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 39 - 146
Target Start/End: Original strand, 4587338 - 4587445
Alignment:
| Q |
39 |
ctagcggcgtagtttattgtccgtttttcttttattcatgtgtaattaatcattattgatcttgtgcttgtatttaacatgtatagcttttcaacttgaa |
138 |
Q |
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| T |
4587338 |
ctagcggcgcagcttattgtccgtttttcttttattcatgtgtaattaatcattattgatcttgtgcttgtatttaacatgtatagcttttcaacttgaa |
4587437 |
T |
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| Q |
139 |
tgattttt |
146 |
Q |
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| T |
4587438 |
tgattttt |
4587445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 4597159 - 4597208
Alignment:
| Q |
293 |
gagaaaaagttggcaagagaagcaccccaacctccaacaccaaaggattc |
342 |
Q |
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| T |
4597159 |
gagaaaaagttggaaagagaagcaccccatcctccaacatcaaaggattc |
4597208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 4602122 - 4602170
Alignment:
| Q |
283 |
taccgtacgagagaaaaagttggcaagagaagcaccccaacctccaaca |
331 |
Q |
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| T |
4602122 |
taccgtgcgagagaaatggttggcaagagaagcaccccatcctccaaca |
4602170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 44190207 - 44190254
Alignment:
| Q |
46 |
cgtagtttattgtccgtttttcttttattcatgtgtaattaatcatta |
93 |
Q |
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| T |
44190207 |
cgtagtttattgtccgctcatcttttattcatgtgtgattaatcatta |
44190254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 28009163 - 28009229
Alignment:
| Q |
18 |
gattttgctatccaaaaatgcctagcggcgtagtttattgtccgtttttcttttattcatgtgtaat |
84 |
Q |
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| T |
28009163 |
gattttgcaatccaaaaaggcctaacgacgcagcttattgtccgtttgccttctattcatgtgtaat |
28009229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 53098352 - 53098282
Alignment:
| Q |
18 |
gattttgctatccaaaaatgcctagcggcgtagtttattgtccgtttttcttttattcatgtgtaattaat |
88 |
Q |
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| T |
53098352 |
gattttacaatccaaaaatgcctcgcggcatagcttattgcatgtttgtcttctattcatgtgtaattaat |
53098282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 30688486 - 30688413
Alignment:
| Q |
20 |
ttttgctatccaaaaatgcctagcggcgtagtttattgtccgtttttcttttattcatgtgtaattaatcatta |
93 |
Q |
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| T |
30688486 |
ttttgttatccaaaaaggcctagcggcgcagcttgttgcccgcttgccatctattcatgtgtaattaatcatta |
30688413 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 2904309 - 2904238
Alignment:
| Q |
20 |
ttttgctatccaaaaatgcctagcggcgtagtttattgtccgtttttcttttattcatgtgtaattaatcatt |
92 |
Q |
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| T |
2904309 |
ttttgctatccaaaaaggt-tagtggcgtagcttgttgtctgtatgtcttctattcatgtgtaattaatcatt |
2904238 |
T |
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