View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5033_high_7 (Length: 342)
Name: NF5033_high_7
Description: NF5033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5033_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 4 - 324
Target Start/End: Complemental strand, 35895320 - 35895009
Alignment:
| Q |
4 |
ggaggagcacagacaaatggttgatcttgtctcacaatcagaggaatattccaaagaattggatgttgctgtcagagcagtccagatggcatgctctcta |
103 |
Q |
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| T |
35895320 |
ggaggaggacagacaaatggttggtcttgtctcacaatcagaagaatattccaaagaattggatgttgctgtcagagcagtccagatggcatgctctcta |
35895221 |
T |
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| Q |
104 |
tgtcaaaaagtgcaagaaaccttgatttccaagtcatccaaggattgtaattcttcagtcacagtggcaggtgaatattctctaattgtgaaaattgtca |
203 |
Q |
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| T |
35895220 |
tgtcaaaaagtgcaagaaaccttgatttccaag---------gattgtaattcttcagtcacagtggcaggtgaatattctctaattgtggaaattgtca |
35895130 |
T |
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| Q |
204 |
tgtcttgtttgcgtgtgttatttttgttttattaagctaatgagttaaacttttatcttagcctgccatatatggatttatatggaattctgagttgatt |
303 |
Q |
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| T |
35895129 |
tgtcttgtttgcgtgagttatttttgttttattaagctaatgagttaaacttttatcttagcctgccatatatggatttatatggaattctgagttgatt |
35895030 |
T |
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| Q |
304 |
attgtgtagggtgtctactgt |
324 |
Q |
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| T |
35895029 |
attgtatagggtgtctactgt |
35895009 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 3109541 - 3109629
Alignment:
| Q |
47 |
gaatattccaaagaattggatgttgctgtcagagcagtccagatggcatgctctctatgtcaaaaagtgcaagaaaccttgatttccaa |
135 |
Q |
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| T |
3109541 |
gaatattccaaggaattggatgttgctgtcagagcagtgcaaatggcttgttcactttgtcagagagtgcaggagagtttgatttccaa |
3109629 |
T |
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