View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5033_low_1 (Length: 658)
Name: NF5033_low_1
Description: NF5033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5033_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 607; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 18 - 648
Target Start/End: Original strand, 54689000 - 54689630
Alignment:
| Q |
18 |
ccttgtctcccccaaggaatctccccaactcataatctgtctcatttgcatgattataacattttcaatacagatgcttcaccgaaaacgtgtttttaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54689000 |
ccttgtctcccccaaggaatctccccaactcataatctgtctcatttgcatgattataacattttcaatacagatgcttcaccgaaaacgtgtttttaat |
54689099 |
T |
|
| Q |
118 |
tgtaaacataaccatttgcacatgtgtagtactgctgtgatgccaaagcaacaactgcagtattgttaggcatgtctctgttggaggaacacgaatcaga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54689100 |
cgtaaacataaccatttgcacatgtgtagtactgctgtgatgccaaagcaacaactgcagtattgttaggcatgtctctgttggaggaacacgaatcaga |
54689199 |
T |
|
| Q |
218 |
tcacccatttaaacatatgttaacatcaatggataccattgacttcctcataggctaggagttgaggtgttttgttcaatatgtttattattctagcaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54689200 |
tcacccatttaaacatatgttaacatcaatggataccattgacttcctcataggctaggagttgaggtgttttgttcaatatgtttattattctagcaag |
54689299 |
T |
|
| Q |
318 |
agtatgaagatacaatacacgtgtatttgattaaaacggatcgtaacaaattatttataaataaaactgcttcttctcctgcagacacatgatccagttt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
54689300 |
agtatgaagatacaatacacgtgtatttgattaaaacggattgtaacaaattatttatagatagaactgcttcttctcctgcagacacatgatccagttt |
54689399 |
T |
|
| Q |
418 |
ccatgtttactctcatcacatgcatgcccctctaattatattgccccttagcactaccagttgaattttaaaatataaaatacgattcttgtctcctgta |
517 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54689400 |
ccatgtttactctcatcacatgcacgcccctctaattatattgccccttagcactaccagttgaattttaaaatataaaatacgattcttgtctcctgta |
54689499 |
T |
|
| Q |
518 |
attatttgctttatattgagaagataacaactactataaccctgacatgttttctgatctcatagtcatctttctttttcagacaagagaaaatggaagt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54689500 |
attatttgctttatattgagaagataacaactactataaccctgacatgttttctgatctcatagtcatctttctttttcagacaagagaaaatggaagt |
54689599 |
T |
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| Q |
618 |
tgctgtagaaacaaacctcaaaagctctctg |
648 |
Q |
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||||||||||||||||| ||||||||||||| |
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| T |
54689600 |
tgctgtagaaacaaaccccaaaagctctctg |
54689630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 54700947 - 54701101
Alignment:
| Q |
18 |
ccttgtctcccccaaggaatctccccaactcataatctgtctcatttgcatgattataacattttcaatacagatgcttcaccg-aaaacgtgtttttaa |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||| |||| ||| |||||| |
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| T |
54700947 |
ccttgtctcccccaaggaatctccccaactcatactctgtctcatttgcatgattataacattttcaatgcaaatgcttcaccgaaaaatgtg-ttttaa |
54701045 |
T |
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| Q |
117 |
ttgtaaacataaccatttgcacatgtgtagt--actgctgtgatgccaaagcaaca |
170 |
Q |
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| |||| |||||||||||||||||| |||| |||||||||||| ||||||||| |
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| T |
54701046 |
tcttaaatataaccatttgcacatgtttagttctctgctgtgatgctaaagcaaca |
54701101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 295 - 428
Target Start/End: Original strand, 54701109 - 54701242
Alignment:
| Q |
295 |
aatatgtttattattctagcaagagtatgaagatacaatacacgtgtatttgattaaaacggatcgtaacaaattatttataaataaaactgcttcttct |
394 |
Q |
| |
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||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||| || ||||||| || |
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| T |
54701109 |
aatatctttattattgtagcaagagtatgaagatacaatacacgtgtacttgattaaaacagatcataacaaattatttataaatataaatgcttctcct |
54701208 |
T |
|
| Q |
395 |
cctgcagacacatgatccagtttccatgtttact |
428 |
Q |
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|| |||||||| |||||| |||||||||||||| |
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| T |
54701209 |
actacagacacaagatccactttccatgtttact |
54701242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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