View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5033_low_3 (Length: 560)

Name: NF5033_low_3
Description: NF5033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5033_low_3
NF5033_low_3
[»] chr7 (1 HSPs)
chr7 (1-560)||(49084480-49085039)


Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Original strand, 49084480 - 49085039
Alignment:
Q  1 agatagtatgtatttattttgtatatctgtctctaattggtttttattgtgttgagaactcttgttttgttgataaatcagtatcaataattgcaaacag 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  49084480 agatagtatgtatttattttgtatatctgtctctaattgggttttattgtgttgagaactcttgttttgttgataaatcagtatcaataattgtgtacag 49084579  T
Q  101 agtgcatttcaaatgaacattacagaatttccgacgttacttttaataaaattcccatttgcaggtatggcagcagtatggtgttgcagcctttatttcc 200  Q
    ||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49084580 agcacatttcaaatgaacattacagaatttccgacgttacttataataaaattcccatttgcaggtatggcagcagtatggtgttgcagcctttatttcc 49084679  T
Q  201 aacaaagagttctcatgaatcacaaaaattatctgaaaatataaacactactcatcattatgatggnnnnnnncaaaagcaggaaaatatcacatatctg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  49084680 aacaaagagttctcatgaatcacaaaaattatctgaaaatataaacactactcatcattatgatggaaaaaaacaaaagcaggaaaatatcacatatctg 49084779  T
Q  301 gtgattggtcagtctgggcaagttgatacaaaatgtcaacttgaattctttccagccacaggggccacttccgacaataagtctatggaacatgataacg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  49084780 gtgattggtcagtctgggcaagttgatacaaaatgtcaacttgaattctttccagccacaggggccacttccgataataagtctatggaacataataacg 49084879  T
Q  401 ttttacattctatgttcaacgcacaatcagggatgcatcccacttggacaccaaaatcagtgttccaaaaagagagttctccatttcccacaagtatttc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49084880 ttttacattctatgttcaacgcacaatcagggatgcatcccacttggacaccaaaatcagtgttccaaaaagagagttctccatttcccacaagtatttc 49084979  T
Q  501 ctcccattccaatcctaaaagtcagaactcagaacctcatcactggtcggatgatgccac 560  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49084980 ctcccattccaatcctaaaagccagaactcagaacctcatcactggtcggatgatgccac 49085039  T

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