View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5034-Insertion-10 (Length: 578)
Name: NF5034-Insertion-10
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034-Insertion-10 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 5 - 304
Target Start/End: Complemental strand, 43232731 - 43232436
Alignment:
| Q |
5 |
acataaacaaacgttagaatcatgctttctaaaatggtaatttcttttccaacttctatatatgtttctcaaaactctatgatttgtcatattttaaaat |
104 |
Q |
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| T |
43232731 |
acataaacaaacgttagaatcatgctttctaaaatggtaatttcttttccaacttctat----gtttctcaaaactctatgatttgtcatattttaaaat |
43232636 |
T |
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| Q |
105 |
cttgacatgcattttttacacgttggattttaaaatcgggataaattgtaggattttgaaaaacggcatgtcggaaaagaaacattctttctaaaataaa |
204 |
Q |
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| T |
43232635 |
cttgacatgcattttttacacgttggattttaaaatcgggataaattgtagggttttgaaaaacggcatgtcggaaaagaaatattctttctaaaataaa |
43232536 |
T |
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| Q |
205 |
taagnnnnnnnnntgttaaagagtattctcaaaacactcgttaaaaaagctaaaattgaaatattctcttcagaaatggtg-aaaaaatgtatattcaat |
303 |
Q |
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| T |
43232535 |
taag-aaaaaaaatgttaaagagtattctcaaaacactcgttaaaaaggctaaaattgaaatattctcttcagaaatagtgaaaaaaatgtatattcaat |
43232437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 357 - 570
Target Start/End: Complemental strand, 43232384 - 43232172
Alignment:
| Q |
357 |
gagcttatggttcccaagaaaagtggtactgataattcgaaattcgactgaaaaatatcttaaaaacatttgttagcatgatccaatnnnnnnntaataa |
456 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| |||||| |
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| T |
43232384 |
gagcttatggttcccaagaaaagtggaactgataattcgaaattcgactcaaaa-tatcttaaaaacatttgttagcatgacccaataaaaaaataataa |
43232286 |
T |
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| Q |
457 |
cataaggtttatataaaaaggaaaattttgctcatgttcaaggtttgattatggatcaagcaaattgtgcaatcctaaaaacaattgtttgcattttcct |
556 |
Q |
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| T |
43232285 |
cataaggtttattaaaaaaggcaaattttgctcatgttcaaggtttgattatggatcaagcaaattatgcaatcctaaaaacaattgtttgcattttcct |
43232186 |
T |
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| Q |
557 |
atttatcatattga |
570 |
Q |
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||||||| |||||| |
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| T |
43232185 |
atttatcctattga |
43232172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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