View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5034-Insertion-11 (Length: 477)

Name: NF5034-Insertion-11
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5034-Insertion-11
NF5034-Insertion-11
[»] chr7 (8 HSPs)
chr7 (8-477)||(24384442-24384911)
chr7 (8-473)||(24390667-24391126)
chr7 (428-473)||(24383803-24383848)
chr7 (427-475)||(46769040-46769088)
chr7 (428-470)||(20414576-20414618)
chr7 (428-470)||(20456193-20456235)
chr7 (430-474)||(22021058-22021102)
chr7 (430-474)||(22036776-22036820)
[»] chr5 (1 HSPs)
chr5 (430-473)||(42297816-42297859)
[»] chr6 (1 HSPs)
chr6 (8-68)||(24956295-24956355)
[»] chr2 (1 HSPs)
chr2 (435-475)||(20975235-20975275)


Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 8 - 477
Target Start/End: Original strand, 24384442 - 24384911
Alignment:
Q  8 ctctaatctctagccctagttttatcaagattcaccgaaacaaatctgaacgaaacaaacaaataatacgaatagagggagacacctcccgcatcgtgtc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24384442 ctctaatctctagccctagttttatcaagattcaccgaaacaaatctgaacgaaacaaacaaataatacgaatagagggagacacctcccgcatcgtgtc 24384541  T
Q  108 caaacgtctcatagtcaattattggcccgttcgtggtttagtggagaacccgttgatcacccttgtggacgaaccttactgcggattgaaggaagaagat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24384542 caaacgtctcatagtcaattattggcccgttcgtggtttagtggagaagccgttgatcacccttgtggacgaaccttactgcggattgaaggaagaagat 24384641  T
Q  208 agcatcattgttgttggttgctgcaacggtttggtttgtttgcttggttattataaattagaatattggctttatatctataacccggccacaagaaaag 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24384642 agcatcattgttgttggttgctgcaacggtttggtttgtttgcttggttattataaattagaatattggctttatttctataacccggccacaagaaaag 24384741  T
Q  308 tatctgacaaattggggtcttttacatggacgtatggatcaaatattgcgttcggatttgataattcaacggacacttataaggtagtgcatatcaataa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24384742 tatctgacaaattggggtcttttacatggacgtatggatcaaatattgcgttcggatttgataattcaacggacacttataaggtagtgcatatcaataa 24384841  T
Q  408 aatgagtagagatgtgaaggtttttagtttgggagataatatttggagaagtattcaaagttttcctgaa 477  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24384842 aatgagtagagatgtgaaggtttttagtttgggagatgatatttggagaagtattcaaagttttcctgaa 24384911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 473
Target Start/End: Original strand, 24390667 - 24391126
Alignment:
Q  8 ctctaatctctagccctagttttatcaagattcaccgaaacaaatctgaacgaaacaaacaaataatacgaatagagggagacacctcccgcatcgtgtc 107  Q
    ||||||||  |||||||| ||||||||| ||||||| ||| |||||||| ||||||||||||||||||| ||||||| | |||   |||   |||| |||    
T  24390667 ctctaatcgatagccctaattttatcaaaattcaccaaaagaaatctgagcgaaacaaacaaataatacaaatagagcgcgactattcc---atcgagtc 24390763  T
Q  108 caaacgtctcatagtcaattattggcccgttcgtggtttagtggagaacccgttgatcacccttgtggacgaaccttactgcggattgaaggaagaagat 207  Q
    ||||  |||||||||||||| ||| ||| ||||||||||| ||||||||||||||||||||| || |||| ||| ||||||| | |||| ||||||   |    
T  24390764 caaatatctcatagtcaattcttgtcccattcgtggtttaatggagaacccgttgatcacccatgcggacaaacattactgcaggttgacggaaga---t 24390860  T
Q  208 agcatcattgttgttggttgctgcaacggtttggtttgtttgcttggttattataaattagaatattggctttatatctataacccggccacaagaaaag 307  Q
    ||  ||  ||||||||||| |||||| ||||||||||| |||||||||| | || |||||||| ||||| ||||| ||||||||||||||||||| ||||    
T  24390861 aggctctatgttgttggttcctgcaatggtttggtttgcttgcttggttttaatcaattagaaaattggttttatttctataacccggccacaaggaaag 24390960  T
Q  308 tatctgacaaattggggtcttttacatggacgtatggatcaaatattgcgttcggatttgataattcaacggacacttataaggtagtgcatatcaataa 407  Q
    |||| || ||||| |||||||||||| ||||  || |||||||||||||||| || |||||||||||||||||||| |||||||||||| |  |   | |    
T  24390961 tatcggaaaaattagggtcttttacaaggacaaatagatcaaatattgcgtttggttttgataattcaacggacacatataaggtagtggagttttgtca 24391060  T
Q  408 aatgagtagagatgtgaaggtttttagtttgggagataatatttggagaagtattcaaagttttcc 473  Q
    |||||||||||||||||  |||||||||||||| |||||||||||||||| |||||||||||||||    
T  24391061 aatgagtagagatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 24391126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 428 - 473
Target Start/End: Original strand, 24383803 - 24383848
Alignment:
Q  428 tttttagtttgggagataatatttggagaagtattcaaagttttcc 473  Q
    ||||||||||||| ||||||||||||| |||||||| |||||||||    
T  24383803 tttttagtttgggtgataatatttggaaaagtattccaagttttcc 24383848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 475
Target Start/End: Original strand, 46769040 - 46769088
Alignment:
Q  427 gtttttagtttgggagataatatttggagaagtattcaaagttttcctg 475  Q
    ||||| ||| |||| |||||||||||||||| |||||||||||||||||    
T  46769040 gttttgagtgtgggtgataatatttggagaactattcaaagttttcctg 46769088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 428 - 470
Target Start/End: Original strand, 20414576 - 20414618
Alignment:
Q  428 tttttagtttgggagataatatttggagaagtattcaaagttt 470  Q
    ||||||||||||| |||||| |||||||||||||| |||||||    
T  20414576 tttttagtttgggtgataatgtttggagaagtattaaaagttt 20414618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 428 - 470
Target Start/End: Original strand, 20456193 - 20456235
Alignment:
Q  428 tttttagtttgggagataatatttggagaagtattcaaagttt 470  Q
    ||||||||||||| |||||| ||||||||||||||||| ||||    
T  20456193 tttttagtttgggtgataatgtttggagaagtattcaatgttt 20456235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 474
Target Start/End: Original strand, 22021058 - 22021102
Alignment:
Q  430 tttagtttgggagataatatttggagaagtattcaaagttttcct 474  Q
    ||||||||||| |||||| ||||||||| |||| |||||||||||    
T  22021058 tttagtttgggcgataatgtttggagaaatattgaaagttttcct 22021102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 474
Target Start/End: Original strand, 22036776 - 22036820
Alignment:
Q  430 tttagtttgggagataatatttggagaagtattcaaagttttcct 474  Q
    ||||||||||| |||||| ||||||||| |||| |||||||||||    
T  22036776 tttagtttgggcgataatgtttggagaaatattgaaagttttcct 22036820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 473
Target Start/End: Original strand, 42297816 - 42297859
Alignment:
Q  430 tttagtttgggagataatatttggagaagtattcaaagttttcc 473  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||    
T  42297816 tttagtttggaagataatgtttggagaactattcaaagttttcc 42297859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 24956355 - 24956295
Alignment:
Q  8 ctctaatctctagccctagttttatcaagattcaccgaaacaaatctgaacgaaacaaaca 68  Q
    |||||||||||| |||||  ||||| || ||||||| ||| ||| ||||||||||||||||    
T  24956355 ctctaatctctaaccctaaatttattaaaattcaccaaaagaaacctgaacgaaacaaaca 24956295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 475
Target Start/End: Original strand, 20975235 - 20975275
Alignment:
Q  435 tttgggagataatatttggagaagtattcaaagttttcctg 475  Q
    |||||| || ||||||||||||| |||||||||||||||||    
T  20975235 tttgggcgaaaatatttggagaaatattcaaagttttcctg 20975275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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