View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5034-Insertion-12 (Length: 356)

Name: NF5034-Insertion-12
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5034-Insertion-12
NF5034-Insertion-12
[»] chr1 (7 HSPs)
chr1 (153-356)||(7846933-7847129)
chr1 (28-76)||(7847205-7847253)
chr1 (311-350)||(18146525-18146564)
chr1 (310-349)||(38143365-38143404)
chr1 (310-349)||(52348371-52348410)
chr1 (310-351)||(11932243-11932284)
chr1 (310-350)||(52348138-52348178)
[»] chr5 (8 HSPs)
chr5 (310-355)||(36245814-36245859)
chr5 (307-350)||(15387317-15387360)
chr5 (269-356)||(5248126-5248213)
chr5 (310-351)||(33052449-33052490)
chr5 (311-355)||(28610094-28610138)
chr5 (310-350)||(29240882-29240922)
chr5 (311-351)||(38184618-38184658)
chr5 (311-351)||(38213699-38213739)
[»] chr7 (8 HSPs)
chr7 (310-350)||(39957613-39957653)
chr7 (307-350)||(19924973-19925016)
chr7 (310-351)||(32984631-32984672)
chr7 (310-355)||(39012878-39012923)
chr7 (310-350)||(34951676-34951716)
chr7 (310-355)||(39012653-39012698)
chr7 (311-351)||(37534820-37534860)
chr7 (310-350)||(48104393-48104433)
[»] chr3 (5 HSPs)
chr3 (311-355)||(19242724-19242768)
chr3 (303-351)||(19245767-19245815)
chr3 (310-350)||(36632478-36632518)
chr3 (310-350)||(40319218-40319258)
chr3 (310-350)||(45698712-45698752)
[»] chr4 (12 HSPs)
chr4 (316-355)||(37065727-37065766)
chr4 (310-350)||(706878-706918)
chr4 (310-350)||(729699-729739)
chr4 (311-351)||(40959170-40959210)
chr4 (316-350)||(36310985-36311019)
chr4 (316-350)||(36325194-36325228)
chr4 (310-355)||(40695686-40695731)
chr4 (310-351)||(47526214-47526255)
chr4 (310-350)||(707629-707669)
chr4 (311-355)||(3334168-3334212)
chr4 (310-350)||(3735601-3735641)
chr4 (311-355)||(13861000-13861044)
[»] chr8 (5 HSPs)
chr8 (307-356)||(13587084-13587133)
chr8 (310-355)||(4018290-4018335)
chr8 (310-351)||(5423807-5423848)
chr8 (310-351)||(16680710-16680751)
chr8 (310-350)||(41529161-41529201)
[»] chr6 (2 HSPs)
chr6 (307-351)||(19987803-19987847)
chr6 (310-341)||(18085806-18085837)
[»] chr2 (2 HSPs)
chr2 (311-351)||(25853751-25853791)
chr2 (310-351)||(23865863-23865904)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 153 - 356
Target Start/End: Complemental strand, 7847129 - 7846933
Alignment:
Q  153 catgctacgttacaaattattttcttctagttttccaaaacgacaagcacaagattaggtcaaacaaatagaggtaaacagtatactatgagttgtaaat 252  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7847129 catgctacgttacaaattattt-cttctagttttccaaaacgacaagcacaagattaggtcaaacaaatataggtaaacagtatactatgagttgtaaat 7847031  T
Q  253 ataaaattgattttccaatcaatggtgtatatatatagtaaggnnnnnnnatgacatgtgtcacttctacgtttattcttaatatttttattattttttc 352  Q
    ||||||||||||||||||      || |||||||| |||||||       ||||||||||||||||| | ||||||||| ||||||||||||||||||||    
T  7847030 ataaaattgattttccaa------gtatatatataaagtaaggtttttttatgacatgtgtcacttccatgtttattctcaatatttttattattttttc 7846937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 7847253 - 7847205
Alignment:
Q  28 aattacatctatttgattataatgctgaatttacaattgctggtgagga 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7847253 aattacatctatttgattataatgctgaatttacaattgctggtgagga 7847205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 350
Target Start/End: Original strand, 18146525 - 18146564
Alignment:
Q  311 tgtcacttctacgtttattcttaatatttttattattttt 350  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  18146525 tgtcgcttctacgtttattctcaatatttttattattttt 18146564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 349
Target Start/End: Original strand, 38143365 - 38143404
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattatttt 349  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  38143365 gtgtcacttccacgtttattcttaatatttttattttttt 38143404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 349
Target Start/End: Original strand, 52348371 - 52348410
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattatttt 349  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  52348371 gtgtcacttccacgtttattcgtaatatttttattatttt 52348410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 11932243 - 11932284
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattatttttt 351  Q
    |||||||||  |||||||||| ||||||||||||||||||||    
T  11932243 gtgtcactttcacgtttattcgtaatatttttattatttttt 11932284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 52348138 - 52348178
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattattttt 350  Q
    |||||||||| ||||||||||  ||||||||||||||||||    
T  52348138 gtgtcacttccacgtttattcgcaatatttttattattttt 52348178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 36245859 - 36245814
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattattttttctat 355  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||    
T  36245859 gtgtcacttccacgtttattctcaatatttttattattttttctat 36245814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 350
Target Start/End: Original strand, 15387317 - 15387360
Alignment:
Q  307 catgtgtcacttctacgtttattcttaatatttttattattttt 350  Q
    |||||||| |||| ||||||||||| ||||||||||||||||||    
T  15387317 catgtgtcgcttccacgtttattctcaatatttttattattttt 15387360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 356
Target Start/End: Original strand, 5248126 - 5248213
Alignment:
Q  269 aatcaatggtgtatatatatagtaaggnnnnnnnatgacatgtgtcacttctacgtttattcttaatatttttattattttttctata 356  Q
    ||||||| ||||||||||| |||||||       ||| || ||||| |||| | ||||||||||| ||||||||||||||||| ||||    
T  5248126 aatcaatagtgtatatataaagtaaggtttttttatgccacgtgtcgcttccatgtttattcttagtatttttattattttttatata 5248213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 33052449 - 33052490
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattatttttt 351  Q
    |||||||||  |||||||||| ||||||||||||||||||||    
T  33052449 gtgtcactttcacgtttattcgtaatatttttattatttttt 33052490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 28610094 - 28610138
Alignment:
Q  311 tgtcacttctacgtttattcttaatatttttattattttttctat 355  Q
    ||||||||  ||||||||||| ||||||||||||| |||||||||    
T  28610094 tgtcactttcacgtttattctcaatatttttattagtttttctat 28610138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 29240882 - 29240922
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattattttt 350  Q
    |||||||||| ||||||||||  ||||||||||||||||||    
T  29240882 gtgtcacttccacgtttattcgcaatatttttattattttt 29240922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 38184658 - 38184618
Alignment:
Q  311 tgtcacttctacgtttattcttaatatttttattatttttt 351  Q
    ||||||||| | |||||||||||||||||||||| ||||||    
T  38184658 tgtcacttccaagtttattcttaatatttttattctttttt 38184618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 38213699 - 38213739
Alignment:
Q  311 tgtcacttctacgtttattcttaatatttttattatttttt 351  Q
    ||||||||| | |||||||||||||||||||||| ||||||    
T  38213699 tgtcacttccaagtttattcttaatatttttattctttttt 38213739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 39957653 - 39957613
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattattttt 350  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  39957653 gtgtcacttctacgtttattcgtaatatttttattattttt 39957613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 350
Target Start/End: Original strand, 19924973 - 19925016
Alignment:
Q  307 catgtgtcacttctacgtttattcttaatatttttattattttt 350  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||    
T  19924973 catgtgtcacttccacgtttattctcaatatttttattattttt 19925016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 32984631 - 32984672
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattatttttt 351  Q
    |||||||||| |||||||||| ||||||||||||||||||||    
T  32984631 gtgtcacttccacgtttattcgtaatatttttattatttttt 32984672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 39012923 - 39012878
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattattttttctat 355  Q
    ||||||||||||| || ||||| |||||||||||||||||||||||    
T  39012923 gtgtcacttctacattcattctcaatatttttattattttttctat 39012878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 34951716 - 34951676
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattattttt 350  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  34951716 gtgtcacttccacgtttattctcaatatttttattattttt 34951676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 39012698 - 39012653
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattattttttctat 355  Q
    |||||||||| || || ||||| |||||||||||||||||||||||    
T  39012698 gtgtcacttcaacattcattctcaatatttttattattttttctat 39012653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 37534860 - 37534820
Alignment:
Q  311 tgtcacttctacgtttattcttaatatttttattatttttt 351  Q
    ||||||||| ||||||||||  |||||||||||||||||||    
T  37534860 tgtcacttccacgtttattcgcaatatttttattatttttt 37534820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 48104393 - 48104433
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattattttt 350  Q
    |||||||||  |||||||||| |||||||||||||||||||    
T  48104393 gtgtcactttaacgtttattcataatatttttattattttt 48104433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 19242724 - 19242768
Alignment:
Q  311 tgtcacttctacgtttattcttaatatttttattattttttctat 355  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  19242724 tgtcacttctacgtttattctcaatatttttattgttttttctat 19242768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 19245815 - 19245767
Alignment:
Q  303 atgacatgtgtcacttctacgtttattcttaatatttttattatttttt 351  Q
    ||||||||||| ||||| || |||||||| |||||||||||||||||||    
T  19245815 atgacatgtgtgacttccacatttattctcaatatttttattatttttt 19245767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 36632478 - 36632518
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattattttt 350  Q
    |||||||||| ||||||||||  ||||||||||||||||||    
T  36632478 gtgtcacttccacgtttattcgcaatatttttattattttt 36632518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 40319218 - 40319258
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattattttt 350  Q
    |||||||||| ||||||||||  ||||||||||||||||||    
T  40319218 gtgtcacttccacgtttattcgcaatatttttattattttt 40319258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 45698752 - 45698712
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattattttt 350  Q
    |||||||||| |||| ||||| |||||||||||||||||||    
T  45698752 gtgtcacttccacgtatattcgtaatatttttattattttt 45698712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 316 - 355
Target Start/End: Original strand, 37065727 - 37065766
Alignment:
Q  316 cttctacgtttattcttaatatttttattattttttctat 355  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  37065727 cttctacgtttattcttaataattttattattttttctat 37065766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 706878 - 706918
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattattttt 350  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  706878 gtgtcacttctacgtttattcgcaatatttttattattttt 706918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 729739 - 729699
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattattttt 350  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  729739 gtgtcacttctacgtttattcgcaatatttttattattttt 729699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 40959210 - 40959170
Alignment:
Q  311 tgtcacttctacgtttattcttaatatttttattatttttt 351  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  40959210 tgtcacttccacgtttattctcaatatttttattatttttt 40959170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 350
Target Start/End: Original strand, 36310985 - 36311019
Alignment:
Q  316 cttctacgtttattcttaatatttttattattttt 350  Q
    |||| ||||||||||||||||||||||||||||||    
T  36310985 cttccacgtttattcttaatatttttattattttt 36311019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 350
Target Start/End: Original strand, 36325194 - 36325228
Alignment:
Q  316 cttctacgtttattcttaatatttttattattttt 350  Q
    |||| ||||||||||||||||||||||||||||||    
T  36325194 cttccacgtttattcttaatatttttattattttt 36325228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 355
Target Start/End: Original strand, 40695686 - 40695731
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattattttttctat 355  Q
    |||||||||  ||||||||||| ||||||||||||||||| |||||    
T  40695686 gtgtcactttcacgtttattctcaatatttttattattttctctat 40695731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 47526214 - 47526255
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattatttttt 351  Q
    |||||||||| ||||||||||  |||||||||||||||||||    
T  47526214 gtgtcacttccacgtttattcgcaatatttttattatttttt 47526255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 707629 - 707669
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattattttt 350  Q
    |||||||||| ||||||||||  ||||||||||||||||||    
T  707629 gtgtcacttccacgtttattcgcaatatttttattattttt 707669  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 3334168 - 3334212
Alignment:
Q  311 tgtcacttctacgtttattcttaatatttttattattttttctat 355  Q
    |||| |||| || |||||||| |||||||||||||||||||||||    
T  3334168 tgtcgcttccacatttattctcaatatttttattattttttctat 3334212  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 3735601 - 3735641
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattattttt 350  Q
    |||||||||| ||||||||||  ||||||||||||||||||    
T  3735601 gtgtcacttccacgtttattcgcaatatttttattattttt 3735641  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 13861000 - 13861044
Alignment:
Q  311 tgtcacttctacgtttattcttaatatttttattattttttctat 355  Q
    ||||||||| || || ||||| |||||||||||||||||||||||    
T  13861000 tgtcacttccacattcattctcaatatttttattattttttctat 13861044  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 13587133 - 13587084
Alignment:
Q  307 catgtgtcacttctacgtttattcttaatatttttattattttttctata 356  Q
    ||||||||||||  || |||||||| ||||||||||||||||||||||||    
T  13587133 catgtgtcactttcacttttattctcaatatttttattattttttctata 13587084  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 4018335 - 4018290
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattattttttctat 355  Q
    |||||||||| || || ||||| |||||||||||||||||||||||    
T  4018335 gtgtcacttccacattcattctcaatatttttattattttttctat 4018290  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 5423807 - 5423848
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattatttttt 351  Q
    |||||||||| ||||||||||| |||||| ||||||||||||    
T  5423807 gtgtcacttccacgtttattctcaatattattattatttttt 5423848  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 16680710 - 16680751
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattatttttt 351  Q
    |||||||||  |||||||||| ||||||||||||||||||||    
T  16680710 gtgtcactttcacgtttattcgtaatatttttattatttttt 16680751  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 41529161 - 41529201
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattattttt 350  Q
    |||||||||| |||||||||  |||||||||||||||||||    
T  41529161 gtgtcacttccacgtttatttgtaatatttttattattttt 41529201  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 19987803 - 19987847
Alignment:
Q  307 catgtgtcacttctacgtttattcttaatatttttattatttttt 351  Q
    ||||||||||||  |||||||||| ||||||||||||||||||||    
T  19987803 catgtgtcactttaacgtttattcgtaatatttttattatttttt 19987847  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 341
Target Start/End: Original strand, 18085806 - 18085837
Alignment:
Q  310 gtgtcacttctacgtttattcttaatattttt 341  Q
    ||||||||||||||||||||||||||||||||    
T  18085806 gtgtcacttctacgtttattcttaatattttt 18085837  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 25853791 - 25853751
Alignment:
Q  311 tgtcacttctacgtttattcttaatatttttattatttttt 351  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  25853791 tgtcacttctacgtttattctcaatacttttattatttttt 25853751  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 351
Target Start/End: Complemental strand, 23865904 - 23865863
Alignment:
Q  310 gtgtcacttctacgtttattcttaatatttttattatttttt 351  Q
    |||||||||| ||||||||||  |||||||||||||||||||    
T  23865904 gtgtcacttccacgtttattcgcaatatttttattatttttt 23865863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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