View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5034-Insertion-13 (Length: 332)

Name: NF5034-Insertion-13
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5034-Insertion-13
NF5034-Insertion-13
[»] chr3 (1 HSPs)
chr3 (8-205)||(37602090-37602284)
[»] chr1 (1 HSPs)
chr1 (8-205)||(46558707-46558901)
[»] chr5 (2 HSPs)
chr5 (133-205)||(22778747-22778820)
chr5 (8-81)||(22778655-22778728)
[»] scaffold0352 (1 HSPs)
scaffold0352 (280-319)||(16829-16868)
[»] chr7 (1 HSPs)
chr7 (282-310)||(27846676-27846704)


Alignment Details
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 37602090 - 37602284
Alignment:
Q  8 gcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaacccactactttacaatctaaatgtaacgtgtccaattgga 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||| ||||||||||||  || ||||||||||||||  ||||||    
T  37602090 gcatcagctactaccatcaaaatatggctgcaagttctacacatgagtaatgc-atcaaatccactactttacggtccaaatgtaacgtgtcatattgga 37602188  T
Q  108 gctttttctacaaatctgcaaattgtacttcaaatccaatgcatggcctatggttatgtgactattatcatgccatcaagtgatcaaatctttttcag 205  Q
    |||||||  ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  37602189 gcttttt--acaaatctgcaaattgtacttcaaatctaatgcatggcctatggttacgtgactattgtcatgccatcaagtgatcaaatctttttcag 37602284  T

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Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 46558901 - 46558707
Alignment:
Q  8 gcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaacccactactttacaatctaaatgtaacgtgtccaattgga 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||| ||||||||||||  || ||||||||||||||  ||||||    
T  46558901 gcatcagctactaccatcaaaatatggctgcaagttctacacatgagtaatgc-atcaaatccactactttacggtccaaatgtaacgtgtcatattgga 46558803  T
Q  108 gctttttctacaaatctgcaaattgtacttcaaatccaatgcatggcctatggttatgtgactattatcatgccatcaagtgatcaaatctttttcag 205  Q
    |||||||  ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  46558802 gcttttt--acaaatctgcaaattgtacttcaaatctaatgcatggcctatggttacgtgactattgtcatgccatcaagtgatcaaatctttttcag 46558707  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 22778747 - 22778820
Alignment:
Q  133 tacttcaaatccaatgcatggcctatggttatgtgactattatcatgccatcaagtgatc-aaatctttttcag 205  Q
    ||||||||||| |||||||||||||||| |||||||||||  |||||||||||||||||| |||||||||||||    
T  22778747 tacttcaaatcaaatgcatggcctatggctatgtgactatcgtcatgccatcaagtgatcaaaatctttttcag 22778820  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 22778655 - 22778728
Alignment:
Q  8 gcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaa-cccactactttaca 81  Q
    |||||| |||||  ||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||    
T  22778655 gcatcaactacttacatcaaaatatggctgcaagttctacacgtgaataatg-catcaaaccccactactttaca 22778728  T

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Target: scaffold0352 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 319
Target Start/End: Complemental strand, 16868 - 16829
Alignment:
Q  280 cttctagactcaattaaataattcgaaacggacattacac 319  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  16868 cttctagactcaattaaataattcgaaacgggcgttacac 16829  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 310
Target Start/End: Complemental strand, 27846704 - 27846676
Alignment:
Q  282 tctagactcaattaaataattcgaaacgg 310  Q
    |||||||||||||||||||||||||||||    
T  27846704 tctagactcaattaaataattcgaaacgg 27846676  T

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