View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5034-Insertion-14 (Length: 565)

Name: NF5034-Insertion-14

Description: NF5034

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF5034-Insertion-14

[»] chr1 (3 HSPs)

Alignment Details

Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 3)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 518; E-Value: 0

Query Start/End: Original strand, 6 - 565

Target Start/End: Complemental strand, 51862242 - 51861683

Alignment:

Q	6	caatgattactattttagatgctagtgatccatgtgatatcaataacataacagattgacagctaatcttggagctcaatgatgagatgaaccttataga	105	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51862242	caatgattactattttagatgctagtgatccatgtgatatcaataacataacagattgacagctaatcttggagctcaatgatgagatgaaccttataga	51862143	T

Q	106	taggtacagaagcatgttaaagcaattgattttgtgnnnnnnnctagttagtataataaccatatatagtggtaagttaatttaatttgtaaaaaaggat	205	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51862142	taggtacagaagcatgttaaagcaattgattttgtgaaaaaaactagttagtataataaccatatatagtggtaagttaatttaatttgtaaaaaaggat	51862043	T

Q	206	cactgatataagtttgcatcatgaaactcaatctaagatatgctattctgttacatctagtcccttttctagttacagaacagtttcttttgggcatcat	305	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51862042	cactgatataagtttgcatcatgaaactcaatctaagatatgctattctgttacatctagtcccttttctagttacagaacagtttcttttgggcatcat	51861943	T

Q	306	ataaacactactcnnnnnnnagttaaattatttccaaaatagatgatttagtacctgaatttcagactgaagacatccatgtagtgcgacaacagtgtaa	405	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51861942	ataaacactactctttttttagttaaattatttccaaaatagatgatttagtacctgaatttcagactgaagacatccatgtagtgcgacaacagtgtaa	51861843	T

Q	406	ctaaaatgacgaagagaagttccgacttttgcatattgttgccatgggatcctatggcagcttcttgagtatcttggctcccaattagcttgcattgcct	505	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51861842	ctaaaatgacgaagagaagttccgacttttgcatattgttgccatgggatcctatggcagcttcttgagtatcttggctcccaattagcttgcattgcct	51861743	T

Q	506	gttcaattctatatgataagatcttctgtcacagcaccaatttcatgatattcttttctt	565	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51861742	gttcaattctatatgataagatcttctgtcacagcaccaatttcatgatattcttttctt	51861683	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2

Raw Score: 103; E-Value: 5e-51

Query Start/End: Original strand, 344 - 514

Target Start/End: Complemental strand, 51822045 - 51821875

Alignment:

Q	344	atagatgatttagtacctgaatttcagactgaagacatccatgtagtgcgacaacagtgtaactaaaatgacgaagagaagttccgacttttgcatattg	443	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51822045	atagctgatttagtacctgaatttctgactgcaaacatccatgtagtgctacaacagtgtaactaaaatggcgaagagaagctcctacttttgcatattg	51821946	T

Q	444	ttgccatgggatcctatggcagcttcttgagtatcttggctcccaattagcttgcattgcctgttcaattc	514	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|
T	51821945	ctgccatgggattctctggcagcattttgagtatcttggctcccaacttgcttgcaatgcctgtttaattc	51821875	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3

Raw Score: 97; E-Value: 2e-47

Query Start/End: Original strand, 352 - 508

Target Start/End: Complemental strand, 51851796 - 51851640

Alignment:

Q	352	tttagtacctgaatttcagactgaagacatccatgtagtgcgacaacagtgtaactaaaatgacgaagagaagttccgacttttgcatattgttgccatg	451	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	51851796	tttagtacctgaatttcagactgcaaacaaccatgtagtgctacaacggtgtaactaaaatggcgaagagcagctcctacttttgcatattgctgccatg	51851697	T

Q	452	ggatcctatggcagcttcttgagtatcttggctcccaattagcttgcattgcctgtt	508	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\|
T	51851696	ggatcctgtggcagcatcttgagtatcttggctcccaatttgcttgtatagcctgtt	51851640	T

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