View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5034-Insertion-3 (Length: 900)
Name: NF5034-Insertion-3
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034-Insertion-3 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 770; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 770; E-Value: 0
Query Start/End: Original strand, 8 - 900
Target Start/End: Original strand, 47807062 - 47807948
Alignment:
| Q |
8 |
tgtataaaacctggatgttttgcatcgattaatgccaaaaatatcaagcttatctacctaaagcgaagcttggtattcgagttatctaaacagcctgaaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47807062 |
tgtataaaacctggatgttttgcatcgattaatgccaaaaatatcaagcttatctacctaaagcgaagcttggtattcgagttatcgaaacagcctgaaa |
47807161 |
T |
|
| Q |
108 |
gctttgtgagtagagtggttggaacttttgttagagccagagtagattccaatgatcataagctaaggaattcataccatcttgtgagagtcataggtat |
207 |
Q |
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|||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47807162 |
gctttgcgagtagggtgattggaacttttgttagagccagagtagattccaatgatcataagctaaggaattcataccatcttgtgagagtcataggtat |
47807261 |
T |
|
| Q |
208 |
aataaattgcatatagatcttgctagctttttaacactactttaaatttatatttctcaatatttggttttatgtatgtactttaaatgattgatcattt |
307 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47807262 |
aataaattgcatatagatcttgctagctttttaacgctacttta------tatttctcaatatttggttctatgtatgtactttaaatgattgatcattt |
47807355 |
T |
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| Q |
308 |
ctcttgtttaacttttaggtgttcaacatgatgaaatgtctaatggaatactcttgcaagtttccttcatgcctaaagctatttccatttctgagctctc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47807356 |
ctcttgtttaacttttaggtgttcaacatgatgaaatgtctaatggaatactcttgcaagtttccttcatgcctaaagctatttccatttctgagctctc |
47807455 |
T |
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| Q |
408 |
tgatgatgatttcacagaggtacatctaaataatttgcagtgaaactatattttcctggaatacatattaattgtcttgttttactgacagcaagaatgc |
507 |
Q |
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| T |
47807456 |
tgatgatgatttcacagaggtacatctaaataatttgcagtgaaactatattttcctggaatacatattaattgtcttgttttactgacagcaagaatgc |
47807555 |
T |
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| Q |
508 |
gaggatttgcggcaaaaagtgaacactggcttgttaccgaaaataactgttgtaagttgtatgatacgtgaagaaaaaatgttttagctttcgaaggacg |
607 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
47807556 |
gaggatttgcggcaaaaagtgaatactggcttgtttccgaaaataactgttgtaagttgtatgatacatgtagaaaaaatgttttagctttcgaaggacg |
47807655 |
T |
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| Q |
608 |
attatctgaaacagcaattgaaaatagtgaaaattagtgtgatccaaaataacattcttactacttattcttgtagcagtttgacagtaaaaccgtgtca |
707 |
Q |
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| T |
47807656 |
cttatctgaaacagcaattgaaaatagtgaaaattagtgtgatccaaaataacattcttactacttattcttgtagcagtttgacagtaaaaccgtgtca |
47807755 |
T |
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| Q |
708 |
ttgttttaagttgtcattcggcgactatcgtgacattttgaattgnnnnnnnnnnnnnnnnacttaaatatatagcggaaaatttgaactactttgtttc |
807 |
Q |
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| T |
47807756 |
ttgttttaagttgtcattcggcgactatcgtgacacgttgaattgtttttattttatttttacttaaatatatagcggaaaatttgaactactttgtttc |
47807855 |
T |
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| Q |
808 |
cctgtctgcattggcaggtggattttcaagagaaggctacaagtcttcacgaggatataacaaaacatgtattcattcttggctctttacttg |
900 |
Q |
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| T |
47807856 |
cctgtctgcattggcaggtggattttcaagagaaggctacaagtcttcacgaggatataacaaaacatgtattcattcttggctctttacttg |
47807948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 12 - 574
Target Start/End: Original strand, 47804504 - 47805061
Alignment:
| Q |
12 |
taaaacctggatgttttgcatcgattaatgccaaaaatatcaagcttatctacctaaagcgaagcttggtattcgagttatctaaacagcctgaaagctt |
111 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | ||||||||| |||||||||| ||||| ||||||||||| |
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| T |
47804504 |
taaaacctggatgttttgcatccattaatgccaataatatcaagcttatctacctaaaacaaagcttggtgatcgagttatcgaaacaacctgaaagctt |
47804603 |
T |
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| Q |
112 |
tgtgagtagagtggttggaacttttgttagagccagagtagattccaatgatcataagctaaggaattcataccatcttgtgagagtcataggtataata |
211 |
Q |
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|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47804604 |
tgcgagtagggtggttggaacttttgttagagccagagtagattccaatgatcataagctaaggaattcataccatcttgtgagagtcataggtataata |
47804703 |
T |
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| Q |
212 |
aattgcatatagatcttgctagctttttaacactactttaaatttatatttctcaatatttggttttatgtatgtactttaaatgattgatcatttctct |
311 |
Q |
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| T |
47804704 |
aattgcatatagatcttgctagctttttaacgctacttta------tatttctcaatatttggttctatgtatgtactttaaatgattgatcatttctct |
47804797 |
T |
|
| Q |
312 |
tgtttaacttttaggtgttcaacatgatgaaatgtctaatggaatactcttgcaagtttccttcatgcctaaagctatttccatttctgagctctctgat |
411 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
47804798 |
tgtttaacttttaggtgttcaacatgatcaaatgtctaatggaatactcttgcaagtttccttcatgcctaaagctatttccatctctgagctctccgat |
47804897 |
T |
|
| Q |
412 |
gatgatttcacagaggtacatctaaataatttgcagtgaaacta-tattttcctggaatacatattaattgtcttgttttactgacagcaagaatgcgag |
510 |
Q |
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| T |
47804898 |
gaagatttcacagaggtacgtgtaaataatttgcagtgaaaatattattatcctggaatacgtattaattgtgttgttttacttacagcaagattgtgag |
47804997 |
T |
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| Q |
511 |
gatttgcggcaaaaagtgaacactggcttgttaccgaaaataactgttgtaagttgtatgatac |
574 |
Q |
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||||| ||| |||||||||| ||||| ||| | || ||| |||||||||||||||||||||||| |
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| T |
47804998 |
gatttacggaaaaaagtgaaaactggattgctcccaaaattaactgttgtaagttgtatgatac |
47805061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 773 - 893
Target Start/End: Original strand, 47805085 - 47805204
Alignment:
| Q |
773 |
aaatatatagcggaaaatttgaactactttgtttccctgtctgcattggcaggtggattttcaagagaaggctacaagtcttcacgaggatataacaaaa |
872 |
Q |
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|||||||||||||| |||| |||| |||| |||||||| ||||||| ||| |||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47805085 |
aaatatatagcggatgattttaacttcttt-tttccctgctggcattggaaggaggatcttcaagagaaggctacaagtcttcacgaggatataacgaaa |
47805183 |
T |
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| Q |
873 |
catgtattcattcttggctct |
893 |
Q |
| |
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|||||||||||||||| |||| |
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| T |
47805184 |
catgtattcattcttgactct |
47805204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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