View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5034-Insertion-4 (Length: 853)
Name: NF5034-Insertion-4
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034-Insertion-4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 687; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 37 - 796
Target Start/End: Original strand, 46497971 - 46498732
Alignment:
| Q |
37 |
gaagaatatgaagaaaaggtgtgggttggagtgtagcttgtactagaagactgaagttggaaagcaaccaaccatttttattgcaacctcagagaattcg |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46497971 |
gaagaatatgaagaaaaggtgtgggttggagtgtagcttgtactagaagactgaagttggaaagcaaccaaccatttttattgcaacctcagagaattcg |
46498070 |
T |
|
| Q |
137 |
atgctctctctctttccnnnnnnnattttctatttcaaaatcatatactcttttgtttttagcatcctatgaaatatacgatttcagacattttatttta |
236 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46498071 |
atgctctctctctttcctttttt-attttctatttcaaaatcatatactcttttgtttttagcatcctatgaaatatacgatttcagacattttatttta |
46498169 |
T |
|
| Q |
237 |
atttaaacaagagtgctatttgcaattgaaggtaagttttacatattatttgtgttcaaagtttcgtacaatattgttaggagcagtctaactcattcgt |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46498170 |
atttaaacaagagtgctatttgcaattgaaggtgagttttacatattatttgtgttcaaagtttcgtacaatattgttaggagcagtctaactcattcgt |
46498269 |
T |
|
| Q |
337 |
tccactatgttcagcccatgtgccagaatgatgttcgtatatacgggtaacataactacccaaaggattgaaaggaacgaagctagggatattaacactt |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46498270 |
tccactatgttcagcccatgtgccagaatgatgttcgtatatacggataacataactacccataggattgaaaggaacgaagctagggatattaacactt |
46498369 |
T |
|
| Q |
437 |
gaaccaatattaattttaatttgtatttcatagtttataatcatgaagtgtagttcaattataaaatatattttgcagtcttatataatgacttaaa--- |
533 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46498370 |
gaaccaatattaattttaatttgtatttcatagtttataatcatgaggtgtagttcaattataaaatatattttgcagtcttatataatgacttaaaagg |
46498469 |
T |
|
| Q |
534 |
ggataatacatagtatacgtatggaattagcttaatatctaatgaaaatataatatcttgcaacatcaaccatttttgtaaggatattttaaaattgatg |
633 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46498470 |
ggataatacatagtatacgtatggaattggcttaatatccaatgaaaatataatatcttgcaacatcaaccacttttgtaaggatattttaaaattgatg |
46498569 |
T |
|
| Q |
634 |
atataccatgaaaaagatagtgatatctctcatcaaatgataattaggagtagggatgacaaaagtgactaacgctccctaattaggagtggaaatacgc |
733 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
46498570 |
atataccatgaaaaagatagtgatatctctcatcaaataataattaggagtagggatgacaaaagtgactaaccctccctaattaggagtggaaatacgc |
46498669 |
T |
|
| Q |
734 |
tgagccgatatcgactttgtaagactagagtctagcttgatgagaaaattcaaggcctaggcc |
796 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46498670 |
tgagccgatatcgactttgtaagactagagtctagcttgatgagaaaattcaaggcctaggcc |
46498732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 737 - 853
Target Start/End: Original strand, 46498730 - 46498846
Alignment:
| Q |
737 |
gccgatatcgactttgtaagactagagtctagcttgatgagaaaattcaaggcctaggccacatttgtagcctgttatatagatttatttttatacttgt |
836 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
46498730 |
gccgatatcgactttgtaagactagagtctagcttgatgagaaaattcaaggcctaggccacatttgtagcctgttatatagatttatttttatactagt |
46498829 |
T |
|
| Q |
837 |
gtatgacctttttgaag |
853 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
46498830 |
gtatgacctttttgaag |
46498846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University