View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5034-Insertion-5 (Length: 733)
Name: NF5034-Insertion-5
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034-Insertion-5 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 361 - 733
Target Start/End: Complemental strand, 40283920 - 40283553
Alignment:
| Q |
361 |
ttatacattggaattttatataaatgtacgtagaaatctaataaaaaactcattataaaaaacttgttaacgtatataggttctatcttgaatttaaaaa |
460 |
Q |
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| T |
40283920 |
ttatacattggaattttatataaatgtacgtagaaatctaataaaaaactcattataaaaaacttgttaacgtatataggttctatcttgaatttaaaaa |
40283821 |
T |
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| Q |
461 |
atttaacatatccatatcctatcacatcggcactatgtattcggacttagtagaccgagacacagtgctgctgctg---catctctgacaaaacacctca |
557 |
Q |
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| T |
40283820 |
atttaacatatccatatcttatcacatcggcactatgtattcggacttagtagaccgagacacagtgctgctgctgcatcatctctgacaaaacacctca |
40283721 |
T |
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| Q |
558 |
aaactagtatgcattaccaccatggaccatggcatgcactttgcagccctacacatcaggattcaattgtgacagaaactccacttattgtcttgaattg |
657 |
Q |
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| T |
40283720 |
aaacta-tatgcattacc-------accatggcatgcactttgcagccctacacatcaggattcaattgtgacagaaactccacttattgtcttgaattg |
40283629 |
T |
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| Q |
658 |
atttttgtggttgctgcacaaattatgctctagccaacaaaatttccatcatcattcatacaatacctcaaagtcc |
733 |
Q |
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| T |
40283628 |
atttttgtggttgctgcacaaattatgctctagccaacaaaatttccatcatcattcatacaatacctcaaagtcc |
40283553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 8 - 365
Target Start/End: Complemental strand, 40284315 - 40283961
Alignment:
| Q |
8 |
aattgtgggggactaacccctccgttagactaaaccaagaattacaattttgttttatgcataagnnnnnnntcgttttaattaattatctttgaatcga |
107 |
Q |
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| T |
40284315 |
aattgtgggagactaacccctccgttagactaaaccaagaattacaattttgttttatgcataagaaaaaaatcgttttaattaattatctttgaatcga |
40284216 |
T |
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| Q |
108 |
gatagtggtaatatagtatattactattagcttgtaaattgagatagtgaattaataataaattatgctgctgacatcctaacaagtttcaactttctaa |
207 |
Q |
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| T |
40284215 |
gatagtggtaatatagtatattactattagcttgtaaattgagatagtgaattaataataaattatgctgctgacatcctaacaagtttcaactttctaa |
40284116 |
T |
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| Q |
208 |
tacttgaccttaaattaagttcgtctataccagttactatcatattctg--nnnnnnnnnnaattatataaaaatatccttctgaatgggcaagaattgg |
305 |
Q |
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| T |
40284115 |
tactttaccttaa-----gtttgtttataccagttactatcatattccggtttttttttttaattatataaaaatatccttctcaatgggcaagaattgg |
40284021 |
T |
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| Q |
306 |
ttgatgaataagcattggctttcagtgatgtaaagtgtagctcaaacatcatagtttata |
365 |
Q |
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| T |
40284020 |
ttgatgaataagcattggctttcagtaatgtaaagtgtagctcaaacatcatagtttata |
40283961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 30231641 - 30231533
Alignment:
| Q |
45 |
agaattacaattttgttttatgcataagnnnnnnntcgttttaattaattatctttgaatcgagatagtg------gtaatatagtatattactattagc |
138 |
Q |
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| T |
30231641 |
agaattacagttttgttgtatgcataagaaaaaaatcgttttaattaattatctttgaattgagatagtgaagttagtaatatagtatattactattagc |
30231542 |
T |
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| Q |
139 |
ttgtaaatt |
147 |
Q |
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| T |
30231541 |
ttgaaaatt |
30231533 |
T |
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