View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5034-Insertion-6 (Length: 691)
Name: NF5034-Insertion-6
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034-Insertion-6 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 299 - 691
Target Start/End: Complemental strand, 21629350 - 21628976
Alignment:
| Q |
299 |
gagtgttctttatcatgatcatctttatattggtcaacatacattttaacatcttcatcaactttcaacatcttcgtcagattaaaacaaaaacaatagt |
398 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| ||| | |
|
|
| T |
21629350 |
gagtgttttttatcatgatcacctttatattggtcaatatacatttcaacatcttcatcaactttcaacatcttcgccagattaaaaaaaaaa--atact |
21629253 |
T |
|
| Q |
399 |
aaaatatttcagattgaatgtttaatttgccattcatcctcttcttccataatatcttctttaaaaaagaatccaaaaa-tttcaagttaaaagacccta |
497 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21629252 |
gatatatttcagattgaatgtttaatttggtattcatcctcttcttccatattatcttctttaaaaaagaatccaaaaaatttcaagttaaaagacccta |
21629153 |
T |
|
| Q |
498 |
aaatgtatttggcttaaaatataataataccattgcaaccttggtataatcccaaattgataggatatatccactgtttcctaccgaatgatggaacacc |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21629152 |
aaatgtatttggcttaaaatataataataccattgcaaccttggtataatcccaaattgataggatatatccactgtttcctaccgaatgatggaacacc |
21629053 |
T |
|
| Q |
598 |
catccaaattgagaacttcaccaaaattgatgacaaaggctttcacttatatatctttcannnnnnnaatagaaatgaaatctagtttctcccc |
691 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
21629052 |
catc-----------------caaaattgatgacaaaggctttcacttatatatctatcatttttttaatagaaatgaaatctagtttctcccc |
21628976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 212
Target Start/End: Complemental strand, 21629818 - 21629787
Alignment:
| Q |
181 |
cattttacatcaaactccattaaaaaatgttt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
21629818 |
cattttacatcaaactccattaaaaaatgttt |
21629787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 21629871 - 21629833
Alignment:
| Q |
8 |
ctagttactagtaataagagtgttagaaatgattaggat |
46 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
21629871 |
ctagttaccagtaataagagtgttagaaattattaggat |
21629833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University