View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5034-Insertion-7 (Length: 690)

Name: NF5034-Insertion-7
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5034-Insertion-7
NF5034-Insertion-7
[»] chr4 (26 HSPs)
chr4 (7-690)||(36866505-36867187)
chr4 (201-319)||(4698639-4698758)
chr4 (272-342)||(23042589-23042659)
chr4 (233-321)||(20114105-20114193)
chr4 (245-343)||(48361044-48361142)
chr4 (233-321)||(48361098-48361186)
chr4 (233-339)||(30191942-30192048)
chr4 (234-319)||(31240889-31240974)
chr4 (233-321)||(4698669-4698757)
chr4 (245-321)||(16412248-16412324)
chr4 (233-277)||(16412280-16412324)
chr4 (245-345)||(30191886-30191986)
chr4 (265-321)||(42169121-42169177)
chr4 (233-293)||(43117896-43117956)
chr4 (280-341)||(15170877-15170938)
chr4 (245-322)||(32714282-32714359)
chr4 (248-293)||(45096616-45096661)
chr4 (233-278)||(53225701-53225746)
chr4 (233-321)||(2411886-2411974)
chr4 (233-321)||(20688462-20688550)
chr4 (230-278)||(35429830-35429878)
chr4 (245-321)||(43117912-43117988)
chr4 (233-321)||(45096620-45096708)
chr4 (187-321)||(48195888-48196024)
chr4 (248-324)||(50121448-50121524)
chr4 (245-321)||(53225702-53225778)
[»] chr2 (25 HSPs)
chr2 (188-321)||(12485992-12486126)
chr2 (237-329)||(9152429-9152521)
chr2 (235-338)||(22857801-22857904)
chr2 (216-302)||(41332655-41332740)
chr2 (233-333)||(39445041-39445141)
chr2 (185-338)||(9152376-9152531)
chr2 (280-321)||(23667442-23667483)
chr2 (233-329)||(38598462-38598558)
chr2 (245-329)||(41153169-41153253)
chr2 (238-317)||(3037776-3037855)
chr2 (260-314)||(11687496-11687550)
chr2 (239-305)||(12873775-12873841)
chr2 (216-277)||(20555286-20555348)
chr2 (186-261)||(27182072-27182149)
chr2 (186-261)||(27831614-27831691)
chr2 (261-322)||(41120030-41120090)
chr2 (233-314)||(41153132-41153213)
chr2 (233-321)||(6761479-6761567)
chr2 (233-321)||(16241281-16241369)
chr2 (270-318)||(25795321-25795369)
chr2 (233-329)||(25891950-25892046)
chr2 (237-277)||(28248991-28249031)
chr2 (233-321)||(42263516-42263604)
chr2 (233-305)||(43714020-43714091)
chr2 (287-327)||(45155150-45155190)
[»] chr3 (26 HSPs)
chr3 (186-339)||(28406463-28406618)
chr3 (233-329)||(40198441-40198537)
chr3 (189-322)||(19649592-19649727)
chr3 (233-331)||(8243686-8243784)
chr3 (233-311)||(653261-653339)
chr3 (233-319)||(55139189-55139275)
chr3 (233-338)||(48593188-48593293)
chr3 (212-314)||(48593163-48593266)
chr3 (222-318)||(2544493-2544590)
chr3 (233-321)||(10049714-10049802)
chr3 (233-321)||(19649625-19649713)
chr3 (222-302)||(32711237-32711317)
chr3 (233-289)||(32711248-32711304)
chr3 (236-296)||(35747329-35747389)
chr3 (222-277)||(25910249-25910304)
chr3 (234-321)||(28406514-28406601)
chr3 (254-325)||(35099065-35099136)
chr3 (233-339)||(18765304-18765410)
chr3 (237-338)||(23825199-23825300)
chr3 (222-339)||(53441903-53442020)
chr3 (233-322)||(55139219-55139308)
chr3 (233-321)||(6086915-6087003)
chr3 (233-321)||(8243728-8243816)
chr3 (233-277)||(8987775-8987819)
chr3 (237-321)||(28564949-28565033)
chr3 (270-318)||(48643687-48643735)
[»] chr6 (22 HSPs)
chr6 (234-321)||(5483875-5483962)
chr6 (233-321)||(1158291-1158379)
chr6 (232-321)||(27909020-27909109)
chr6 (233-321)||(1158259-1158347)
chr6 (222-321)||(5483896-5483995)
chr6 (233-296)||(7649845-7649908)
chr6 (220-339)||(30895217-30895336)
chr6 (225-314)||(8029526-8029615)
chr6 (222-315)||(9246077-9246170)
chr6 (281-329)||(5250809-5250857)
chr6 (239-339)||(9077638-9077738)
chr6 (222-338)||(17265718-17265834)
chr6 (233-321)||(28630767-28630855)
chr6 (233-321)||(28630799-28630887)
chr6 (245-329)||(30627829-30627913)
chr6 (222-277)||(20703435-20703490)
chr6 (237-339)||(7405494-7405596)
chr6 (222-324)||(7649810-7649912)
chr6 (233-321)||(12999769-12999857)
chr6 (233-293)||(28863366-28863426)
chr6 (222-258)||(30732403-30732439)
chr6 (237-341)||(31971024-31971128)
[»] chr7 (26 HSPs)
chr7 (222-330)||(2610222-2610329)
chr7 (233-329)||(6838421-6838517)
chr7 (245-329)||(28677375-28677459)
chr7 (233-321)||(39153301-39153389)
chr7 (233-341)||(41850642-41850750)
chr7 (233-319)||(26563937-26564023)
chr7 (233-338)||(28677314-28677419)
chr7 (239-324)||(45533282-45533367)
chr7 (234-326)||(2399961-2400053)
chr7 (233-329)||(2523776-2523872)
chr7 (233-321)||(26563967-26564055)
chr7 (233-321)||(29365635-29365723)
chr7 (245-321)||(36245434-36245510)
chr7 (222-302)||(40362003-40362083)
chr7 (237-339)||(12763279-12763381)
chr7 (233-319)||(36245392-36245478)
chr7 (280-321)||(25780663-25780704)
chr7 (216-277)||(29125155-29125216)
chr7 (214-321)||(7107656-7107764)
chr7 (233-321)||(22055776-22055864)
chr7 (270-318)||(29559520-29559568)
chr7 (233-329)||(32050126-32050222)
chr7 (222-274)||(40364641-40364693)
chr7 (270-318)||(41088869-41088917)
chr7 (218-278)||(47538787-47538847)
chr7 (218-278)||(47545344-47545404)
[»] chr5 (22 HSPs)
chr5 (200-315)||(35922052-35922167)
chr5 (216-321)||(38393783-38393889)
chr5 (233-289)||(4409375-4409431)
chr5 (233-296)||(1420703-1420766)
chr5 (270-319)||(4939478-4939527)
chr5 (231-291)||(4409373-4409433)
chr5 (270-330)||(6499986-6500046)
chr5 (233-329)||(18353254-18353350)
chr5 (237-321)||(42311824-42311908)
chr5 (222-321)||(1138232-1138330)
chr5 (261-320)||(6604396-6604455)
chr5 (233-340)||(13789727-13789834)
chr5 (239-321)||(21488297-21488379)
chr5 (233-327)||(38394474-38394568)
chr5 (280-321)||(26163975-26164016)
chr5 (233-338)||(29374216-29374321)
chr5 (264-321)||(40740353-40740410)
chr5 (233-321)||(26898205-26898293)
chr5 (233-329)||(29374176-29374272)
chr5 (233-321)||(37699794-37699882)
chr5 (245-329)||(38394434-38394518)
chr5 (281-321)||(40740423-40740463)
[»] chr1 (24 HSPs)
chr1 (272-321)||(25021316-25021365)
chr1 (222-339)||(26760169-26760286)
chr1 (222-339)||(26924248-26924365)
chr1 (237-321)||(26733799-26733883)
chr1 (233-321)||(34332522-34332610)
chr1 (233-321)||(49944879-49944967)
chr1 (272-321)||(27422921-27422970)
chr1 (233-321)||(11386201-11386288)
chr1 (233-321)||(15286023-15286111)
chr1 (233-321)||(38830529-38830617)
chr1 (245-321)||(50155356-50155432)
chr1 (284-327)||(2855093-2855136)
chr1 (280-339)||(26823133-26823192)
chr1 (233-311)||(15285460-15285538)
chr1 (220-262)||(28358995-28359037)
chr1 (233-327)||(38737939-38738033)
chr1 (245-331)||(49944837-49944923)
chr1 (233-278)||(50155355-50155400)
chr1 (233-321)||(14281636-14281724)
chr1 (233-321)||(23398126-23398214)
chr1 (233-321)||(29892176-29892264)
chr1 (245-305)||(34332506-34332566)
chr1 (233-321)||(44939080-44939168)
chr1 (233-293)||(48377832-48377892)
[»] chr8 (24 HSPs)
chr8 (233-321)||(10396806-10396894)
chr8 (233-321)||(8793765-8793853)
chr8 (233-333)||(10839809-10839908)
chr8 (237-321)||(41915644-41915728)
chr8 (222-321)||(5031499-5031598)
chr8 (233-340)||(7693028-7693135)
chr8 (216-293)||(6354689-6354767)
chr8 (239-321)||(35149682-35149764)
chr8 (233-331)||(41569142-41569240)
chr8 (245-329)||(3236338-3236420)
chr8 (281-314)||(9550203-9550236)
chr8 (280-341)||(24822816-24822877)
chr8 (235-292)||(26229668-26229725)
chr8 (233-322)||(32597511-32597600)
chr8 (237-338)||(40465235-40465336)
chr8 (221-277)||(1364149-1364205)
chr8 (237-321)||(7668241-7668325)
chr8 (222-294)||(9678782-9678854)
chr8 (245-321)||(16008537-16008613)
chr8 (233-329)||(25847973-25848069)
chr8 (237-321)||(25848017-25848101)
chr8 (237-341)||(33642508-33642612)
chr8 (264-324)||(34711092-34711152)
chr8 (233-321)||(43135090-43135178)
[»] scaffold0767 (1 HSPs)
scaffold0767 (264-339)||(3719-3794)
[»] scaffold0002 (2 HSPs)
scaffold0002 (233-311)||(423294-423372)
scaffold0002 (233-321)||(492351-492439)
[»] scaffold0025 (1 HSPs)
scaffold0025 (222-311)||(65974-66063)
[»] scaffold0001 (1 HSPs)
scaffold0001 (233-321)||(156782-156870)
[»] scaffold0531 (1 HSPs)
scaffold0531 (225-296)||(6888-6959)
[»] scaffold0067 (1 HSPs)
scaffold0067 (232-321)||(5230-5319)
[»] scaffold0018 (1 HSPs)
scaffold0018 (233-322)||(183838-183927)


Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 7 - 690
Target Start/End: Complemental strand, 36867187 - 36866505
Alignment:
Q  7 acaatatagactgattcaccaatcatatcttacaaaaattgcatgttgatttcaaataacatggggacaaaagaggtatgagtattgatcatttgacgga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36867187 acaatatagactgattcaccaatcatatcttacaaaaattgcatgttgatttcaaataacatggggacaaaagagatatgagtattgatcatttgacgga 36867088  T
Q  107 tttgaagaaatgattttgtattatgtttgagccgtttctcttaaaatgcatcaacattggtgctannnnnnnn-----gttggttatactccctctggtc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||             |||||||||||| |||||||||    
T  36867087 tttgaagaaatgattttgtattatgtttgagccgtttctcttaaaatgcatcaacattagtgctattttttttttgttgttggttatacttcctctggtc 36866988  T
Q  202 tatttaggataaacaattaattttt-aagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaa 300  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  36866987 tatttagaataaacaattaattttttaagttaattgaataatttatgtacttggtctagaatatagacaaaatacatcaattattcaataaatctataaa 36866888  T
Q  301 gtcaattgtttcttgtaaataagatcggatggaatattattgttgatttacttgttaaatgtgtgaaggtttgtcgatgacactttgatgagttattaaa 400  Q
    ||||||||||||||||||||     |||| ||| ||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  36866887 gtcaattgtttcttgtaaat-----cggagggagtattactgttgatttacttgttaaatatgtgaaggttggtcgatgacactttgatgagttattaaa 36866793  T
Q  401 atggccttacgtggggtagtgtggtcaattgatctcacttggttattgtattttttaccaatacttagagatattaatgcaatgtgagtatgtgacctta 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||| ||    
T  36866792 atggccttacgtggggtagtgtggtcaattgatctcacttggttattgtattttttaccaatacttaga--tattgatgcaatgtgagtatgtgacccta 36866695  T
Q  501 ttaatatgatgttattatttcaacataatcctttcatagcactacaacagaagtaacattaaaattattacattgataaacataatccaaaaaagaccca 600  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36866694 ttaatatgatgttattatttcaacataatcctttcataacactacaacagaagtaacgttaaaattattacattgataaacataatccaaaaaagaccca 36866595  T
Q  601 aattcagctgcatttgagccacttagtctctcacatgtgtctgcgaagctctctctcaacggttacgattctcctaaatccttaactgcc 690  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36866594 aattcatcagcatttgagccacttagtctctcacatgtgtctgcgaagctctctctcaacggttacgattcttctaaatccttaactgcc 36866505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 201 - 319
Target Start/End: Complemental strand, 4698758 - 4698639
Alignment:
Q  201 ctatttaggataaacaattaatttttaagtta-attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataa 299  Q
    |||||||  |||||||||| |||||| || || |||||||||||||||||| ||||||||||| || || | ||||||  ||||||||||  || || ||    
T  4698758 ctatttacaataaacaattgattttttagatacattgaataatttatgtatatggtctagaatctaaaccagatacataaattattcaatgtatctaaaa 4698659  T
Q  300 agtcaattgtttcttgtaaa 319  Q
    | ||||||||||||||||||    
T  4698658 attcaattgtttcttgtaaa 4698639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 272 - 342
Target Start/End: Complemental strand, 23042659 - 23042589
Alignment:
Q  272 atacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatggaatattattg 342  Q
    ||||||||||||||||||||||||| | | ||||||||||||| |||||||||||| ||| | ||||||||    
T  23042659 atacatcgattattcaataaatttaaataatcaattgtttcttataaataagatcgaatgaagtattattg 23042589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 20114105 - 20114193
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||||||||||||||| |||||||||||| | ||||||   ||||||||| ||| || ||||| |||||||| || ||||||    
T  20114105 attgaataatttatgtatttggtttagaatatagaccatatacattagttattcaattaatctaaaaagtaaattgttttttataaata 20114193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 245 - 343
Target Start/End: Complemental strand, 48361142 - 48361044
Alignment:
Q  245 atgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatggaatattattgt 343  Q
    |||||||||||||| | | ||||||||||||||| |||| ||||| ||| || |||||||| | |||||| |||||| || |||| ||| |||||||||    
T  48361142 atgtatttggtctatattctagacaaaatacatcaattactcaatgaatctaaaaagtcaaatttttcttataaataggaccggagggagtattattgt 48361044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 48361098 - 48361186
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||| ||||| |||||||| ||||||||||||||| |||||||||  |||| |||| |||  | |||||||| |||||||| ||||||    
T  48361098 attgagtaattgatgtattttgtctagaatatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttcttataaata 48361186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 233 - 339
Target Start/End: Original strand, 30191942 - 30192048
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatgg 332  Q
    ||||| ||||| |||||||| ||||||||||||||| |||||||||  |||| |||| |||  | ||||| || |||||||| |||||| || |||| ||    
T  30191942 attgagtaattgatgtattttgtctagaatatagaccaaatacatcatttatgcaatgaatcaaaaaagttaaatgtttcttataaatacgaccggaggg 30192041  T
Q  333 aatatta 339  Q
    | |||||    
T  30192042 agtatta 30192048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 31240889 - 31240974
Alignment:
Q  234 ttgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaa 319  Q
    ||||||||||||||||| |||| || ||| || || ||||||||   |||||||||  ||||| ||||| ||||||||||||||||    
T  31240889 ttgaataatttatgtatctggtttaaaatctaaactaaatacataatttattcaatgtatttaaaaagttaattgtttcttgtaaa 31240974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 4698669 - 4698757
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||||||||||||||| |||| |||| | ||||| | ||||||  ||||||||||  || || ||| |||||||||| |||||||||    
T  4698669 attgaataatttatgtatctggtttagattctagaccatatacataaattattcaatgtatctaaaaaatcaattgtttattgtaaata 4698757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 321
Target Start/End: Complemental strand, 16412324 - 16412248
Alignment:
Q  245 atgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||||||||||| | | ||||| ||||| ||| |||||||||| ||| || |||||||||| |||||| ||||||    
T  16412324 atgtatttggtctatattctagaccaaatatatcaattattcaatgaatctaaaaagtcaattttttcttataaata 16412248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 16412280 - 16412324
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacat 277  Q
    ||||||||||| || ||||||||||||||||||||| ||||||||    
T  16412280 attgaataattgatatatttggtctagaatatagaccaaatacat 16412324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 345
Target Start/End: Complemental strand, 30191986 - 30191886
Alignment:
Q  245 atgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatggaatattattgtt 344  Q
    |||||||||||||| | | ||||||||||||||| |||| ||||| ||| || ||| |||||| |||||| |||||| ||   || ||| ||||||||||    
T  30191986 atgtatttggtctatattctagacaaaatacatcaattactcaatgaatctaaaaaatcaattttttcttataaataggactagacggagtattattgtt 30191887  T
Q  345 g 345  Q
    |    
T  30191886 g 30191886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 42169121 - 42169177
Alignment:
Q  265 agacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||||||||||| |||||||||||||| || |||||||| | |||||| ||||||    
T  42169121 agacaaaatacatcaattattcaataaatctaaaaagtcaaatttttcttataaata 42169177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 43117956 - 43117896
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaat 293  Q
    ||||||||||| ||||||||||| || ||||||||| |||||||||  |||| ||||||||    
T  43117956 attgaataattgatgtatttggtataaaatatagaccaaatacatcatttatgcaataaat 43117896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 15170938 - 15170877
Alignment:
Q  280 attattcaataaatttataaagtcaattgtttcttgtaaataagatcggatggaatattatt 341  Q
    ||||||||||  ||||| |||||||||| | |||||||||||||| |||| ||| |||||||    
T  15170938 attattcaatgtatttaaaaagtcaattttctcttgtaaataagaccggagggagtattatt 15170877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 322
Target Start/End: Complemental strand, 32714359 - 32714282
Alignment:
Q  245 atgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataa 322  Q
    |||||||| ||||||||||||||| |||||||||  ||||  ||| |||  | |||||||| |||||||| |||||||    
T  32714359 atgtattttgtctagaatatagactaaatacatcatttatgtaatgaatcaaaaaagtcaaatgtttcttataaataa 32714282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 45096661 - 45096616
Alignment:
Q  248 tatttggtctagaatatagacaaaatacatcgattattcaataaat 293  Q
    ||||||||||| ||| ||||||| ||||||| ||||||||||||||    
T  45096661 tatttggtctataatctagacaagatacatcaattattcaataaat 45096616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 53225746 - 53225701
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatc 278  Q
    ||||||||||| ||||||||||| |||||| ||||| |||||||||    
T  53225746 attgaataattaatgtatttggtatagaatgtagaccaaatacatc 53225701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 2411886 - 2411974
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||||||| ||||||| | ||| ||||| || || ||||||||  |||||| |||  || || ||||| ||||||||||||||||||    
T  2411886 attgaataatgtatgtatctagtcaagaatctaaactaaatacataaattatttaatgtatctaaaaagtaaattgtttcttgtaaata 2411974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 20688462 - 20688550
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||||||||||||||| |||  | | ||| | ||||||  ||||||||||  || || |||||||| ||| |||||||||||    
T  20688462 attgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagtcaactgtctcttgtaaata 20688550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 35429878 - 35429830
Alignment:
Q  230 ttaattgaataatttatgtatttggtctagaatatagacaaaatacatc 278  Q
    |||||||| ||||| |||||| | ||||||||||||||| |||||||||    
T  35429878 ttaattgagtaattgatgtatcttgtctagaatatagaccaaatacatc 35429830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 43117912 - 43117988
Alignment:
Q  245 atgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||||||||||| | | || || ||||||||| |||||||||| ||| || ||| |||||| |||||| ||||||    
T  43117912 atgtatttggtctatattttataccaaatacatcaattattcaatgaatgtaaaaaatcaattttttcttataaata 43117988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 45096620 - 45096708
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||| |||||| | ||||||| ||||||| ||||| |||  |||| ||||||||  | |||||||| ||||| || ||||||    
T  45096620 attgaataattgatgtatcttgtctagattatagaccaaatatatcatttatgcaataaatcaaaaaagtcaaatgttttttataaata 45096708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 187 - 321
Target Start/End: Original strand, 48195888 - 48196024
Alignment:
Q  187 atactccctctggtc-tatttaggataaacaattaa-tttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattat 284  Q
    ||||||||||||||| ||||||  | ||| || ||| ||||||| || ||||| ||||| | |||| | ||||||||||||||| |||||||||  ||||    
T  48195888 atactccctctggtcctatttataagaaaaaactaactttttaaattcattgagtaattgacgtatcttgtctagaatatagaccaaatacatcatttat 48195987  T
Q  285 tcaataaatttataaagtcaattgtttcttgtaaata 321  Q
     |||| ||   | |||||||| |||||||| ||||||    
T  48195988 gcaatgaaccaaaaaagtcaaatgtttcttataaata 48196024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 248 - 324
Target Start/End: Complemental strand, 50121524 - 50121448
Alignment:
Q  248 tatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataaga 324  Q
    ||||||||||| |   ||||||| ||||||| || ||||||||||| || |||||||| | |||||| |||||||||    
T  50121524 tatttggtctatatactagacaagatacatcaatcattcaataaatctaaaaagtcaaatttttcttataaataaga 50121448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 53225702 - 53225778
Alignment:
Q  245 atgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||||||||||| | | || || ||||||||  |||||||||| ||| || |||||||||| |||||| ||||||    
T  53225702 atgtatttggtctacattctataccaaatacattaattattcaatgaatctaaaaagtcaattttttcttataaata 53225778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 188 - 321
Target Start/End: Original strand, 12485992 - 12486126
Alignment:
Q  188 tactccctctggtctatttaggataaacaattaa-tttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattc 286  Q
    ||||||||| ||||||||||  | ||| |||| | |||||| ||| ||||||||||||||| | | || ||||||||||||| ||||||||| |||||||    
T  12485992 tactccctccggtctatttacaagaaagaattgactttttaggttcattgaataatttatggactcggcctagaatatagaccaaatacatcaattattc 12486091  T
Q  287 aataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||| ||| || ||||||||||||||||||||||||    
T  12486092 aatgaatctaaaaagtcaattgtttcttgtaaata 12486126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 237 - 329
Target Start/End: Original strand, 9152429 - 9152521
Alignment:
Q  237 aataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcgga 329  Q
    ||||||| |||||||||||||| | | ||||| | ||||||| |||| ||||| ||| || ||||||||||||||||||||||||||| ||||    
T  9152429 aataattgatgtatttggtctatattttagactagatacatcaattactcaatgaatctaaaaagtcaattgtttcttgtaaataagaccgga 9152521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 235 - 338
Target Start/End: Complemental strand, 22857904 - 22857801
Alignment:
Q  235 tgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatggaa 334  Q
    ||||||||||||||||||||| |||| | ||||  | ||||||  ||||||||||  || || ||||||||||||||||||||  |||||||||| |||     
T  22857904 tgaataatttatgtatttggtttagattctagatcagatacataaattattcaatgtatctaaaaagtcaattgtttcttgtatttaagatcggagggag 22857805  T
Q  335 tatt 338  Q
    ||||    
T  22857804 tatt 22857801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 302
Target Start/End: Original strand, 41332655 - 41332740
Alignment:
Q  216 aattaatttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagt 302  Q
    ||||| |||||||||| ||||||||||| ||| ||| ||| |  ||||||||||||||||||| |||||||||||||| || |||||    
T  41332655 aattattttttaagttcattgaataattaatgaatt-ggtttgtaatatagacaaaatacatcaattattcaataaatgtaaaaagt 41332740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 39445041 - 39445141
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatgg 332  Q
    ||||| ||||| |||||||| ||||||||||||||  ||||||| |  |||| ||||||||| | |||||||||  |||||| ||||||  |||||||||    
T  39445041 attgagtaattgatgtattttgtctagaatatagattaaatacaccatttatgcaataaattaaaaaagtcaataatttcttataaatagaatcggatgg 39445140  T
Q  333 a 333  Q
    |    
T  39445141 a 39445141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 185 - 338
Target Start/End: Complemental strand, 9152531 - 9152376
Alignment:
Q  185 ttatactccctctggtct-atttaggataaacaattaatttttaag-ttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgatt 282  Q
    |||||||||||| ||||| |||||  | |||||||| | |||| || || ||||| ||||| |||||| | ||||| ||||||||| ||||||||| |||    
T  9152531 ttatactccctccggtcttatttacaagaaacaattgactttttagattcattgagtaattgatgtatctagtctaaaatatagaccaaatacatcaatt 9152432  T
Q  283 attcaataaatttataaagtcaattgtttcttgtaaataagatcggatggaatatt 338  Q
    ||| ||| | |  | |||||||| ||||||||||||||| || |||| ||| ||||    
T  9152431 atttaatgactcaaaaaagtcaaatgtttcttgtaaataggaccggagggagtatt 9152376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 23667483 - 23667442
Alignment:
Q  280 attattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  23667483 attattcaataaaattaaaaagtcaattgtttcttgtaaata 23667442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 329
Target Start/End: Complemental strand, 38598558 - 38598462
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcgga 329  Q
    |||||||||| ||||||| ||||| ||||  || || ||||||||  |||||| |||| || || ||||| |||||| |||||||||||||| ||||    
T  38598558 attgaataatatatgtatctggtcaagaacctaaaccaaatacataaattatttaatatatataaaaagtaaattgtctcttgtaaataagaccgga 38598462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 41153169 - 41153253
Alignment:
Q  245 atgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcgga 329  Q
    |||||||||||||| | |||| || ||||||||| |||| ||||| ||| || |||||||| | |||||| |||||| |||||||    
T  41153169 atgtatttggtctatattataaaccaaatacatcaattactcaatgaatctaaaaagtcaactttttcttataaataggatcgga 41153253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 317
Target Start/End: Original strand, 3037776 - 3037855
Alignment:
Q  238 ataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgta 317  Q
    |||||| ||||||  ||||||||||||| || ||||||||  |||||||||| ||| || ||| ||| ||||||||||||    
T  3037776 ataattgatgtatccggtctagaatatacaccaaatacataaattattcaatgaatctaaaaaatcatttgtttcttgta 3037855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 11687550 - 11687496
Alignment:
Q  260 aatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttctt 314  Q
    ||||||||| | |||||||  |||  |||||||||||||||||||||||||||||    
T  11687550 aatatagactagatacatcacttacacaataaatttataaagtcaattgtttctt 11687496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 12873775 - 12873841
Alignment:
Q  239 taatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaa 305  Q
    ||||| ||||||||||| |||||||||||| |||||||||  |||| |||| |||  ||||||||||    
T  12873775 taattaatgtatttggtatagaatatagactaaatacatcatttatgcaatgaatcaataaagtcaa 12873841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 20555286 - 20555348
Alignment:
Q  216 aattaatttttaagtta-attgaataatttatgtatttggtctagaatatagacaaaatacat 277  Q
    ||||||||||| || || ||||||||||| |||||| | ||||||||||||||| ||||||||    
T  20555286 aattaattttttagatacattgaataattgatgtatcttgtctagaatatagaccaaatacat 20555348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 27182072 - 27182149
Alignment:
Q  186 tatactccctctggtct-atttaggataaacaattaatttttaagtta-attgaataatttatgtatttggtctagaa 261  Q
    ||||||||||||| ||| |||||  | |||||||| |||||| || || ||||||||||||||||||||||| |||||    
T  27182072 tatactccctctgatcttatttacaagaaacaattgatttttcagatacattgaataatttatgtatttggtttagaa 27182149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 27831614 - 27831691
Alignment:
Q  186 tatactccctctggtct-atttaggataaacaattaatttttaagtta-attgaataatttatgtatttggtctagaa 261  Q
    ||||||||||||| ||| |||||  | |||||||| |||||| || || ||||||||||||||||||||||| |||||    
T  27831614 tatactccctctgatcttatttacaagaaacaattgatttttcagatacattgaataatttatgtatttggtttagaa 27831691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 41120030 - 41120090
Alignment:
Q  261 atatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataa 322  Q
    |||||||| | ||||||  |||||||||||||| || ||||||||||||||||| |||||||    
T  41120030 atatagaccagatacattaattattcaataaatata-aaagtcaattgtttcttataaataa 41120090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 41153213 - 41153132
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttctt 314  Q
    ||||| ||||| ||||||||||| || ||||||||| |||||||||  |||| |||| |||  | |||||||| ||||||||    
T  41153213 attgagtaattgatgtatttggtttataatatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttctt 41153132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 321
Target Start/End: Complemental strand, 6761567 - 6761479
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||||||| ||||||| | ||| |||| ||| || ||||||||  ||||||||||  || || ||||| |||||| |||||||||||    
T  6761567 attgaataatgtatgtatctagtcaagaacataaaccaaatacataaattattcaatgtatctaaaaagtaaattgtctcttgtaaata 6761479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 321
Target Start/End: Complemental strand, 16241369 - 16241281
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||||||||||||||| |||  | | ||| | ||||||  ||||||||||  || || |||||||| ||| |||||||||||    
T  16241369 attgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagtcaactgtctcttgtaaata 16241281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 25795321 - 25795369
Alignment:
Q  270 aaatacatcgattattcaataaatttataaagtcaattgtttcttgtaa 318  Q
    ||||||||  |||||||||| ||| || |||||||||||||||||||||    
T  25795321 aaatacattaattattcaatgaatctaaaaagtcaattgtttcttgtaa 25795369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 329
Target Start/End: Complemental strand, 25892046 - 25891950
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcgga 329  Q
    ||||||||||||||||||||||| |||  | | ||| | ||||||  ||||||||||  || || |||||||| ||| |||| |||||| |||||||    
T  25892046 attgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatttatctaaaaagtcaactgtctcttataaataggatcgga 25891950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 237 - 277
Target Start/End: Complemental strand, 28249031 - 28248991
Alignment:
Q  237 aataatttatgtatttggtctagaatatagacaaaatacat 277  Q
    ||||||| ||||||||||| |||||||||||| ||||||||    
T  28249031 aataattaatgtatttggtatagaatatagactaaatacat 28248991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 42263516 - 42263604
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||||||| ||||||||| ||| ||||  || || ||||||||  |||||| |||  || || ||||| ||||||||||||||||||    
T  42263516 attgaataatgtatgtatttagtcaagaacctaaaccaaatacataaattatttaatgtatctaaaaagtaaattgtttcttgtaaata 42263604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 43714020 - 43714091
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaa 305  Q
    ||||||||| ||||||||||||||||  || ||||||| ||||||| |||| ||| ||||| || ||||||||    
T  43714020 attgaataaattatgtatttggtcta-tatttagacaagatacatcaattactcagtaaatctaaaaagtcaa 43714091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 45155150 - 45155190
Alignment:
Q  287 aataaatttataaagtcaattgtttcttgtaaataagatcg 327  Q
    |||||||||| ||| ||||||||||||| ||||||||||||    
T  45155150 aataaatttaaaaaatcaattgtttcttataaataagatcg 45155190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 8e-23; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 186 - 339
Target Start/End: Complemental strand, 28406618 - 28406463
Alignment:
Q  186 tatactccctctggtc-tatttaggataaacaattaa-tttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgatta 283  Q
    ||||||||||| |||| ||||||  | |||||||| | |||||| ||| |||||||||||||||||   |||||||||||||||| ||||||||  ||||    
T  28406618 tatactccctccggtcctatttacaagaaacaattgactttttaggttcattgaataatttatgtacccggtctagaatatagaccaaatacattaatta 28406519  T
Q  284 ttcaataaatttataaagtcaattgtttcttgtaaataagatcggatggaatatta 339  Q
    |||||  ||| || |||||||||||||||||||||||| || |||| ||| |||||    
T  28406518 ttcaacgaatctaaaaagtcaattgtttcttgtaaataggaccggagggagtatta 28406463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 233 - 329
Target Start/End: Original strand, 40198441 - 40198537
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcgga 329  Q
    ||||||||||||||||||| |||||||||||| ||| | ||||||| ||| |||||||||| || ||||||||||||||  | ||||||||| ||||    
T  40198441 attgaataatttatgtattcggtctagaatatcgaccagatacatcaattgttcaataaatctaaaaagtcaattgtttactataaataagaccgga 40198537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 189 - 322
Target Start/End: Complemental strand, 19649727 - 19649592
Alignment:
Q  189 actccctctggtc-tatttaggataaacaattaatttttaag-ttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattc 286  Q
    ||||||||||||| ||||||  | ||||| || |||||| || || ||||| ||||| ||||||| |||||| ||||||||| ||||||||| |||||||    
T  19649727 actccctctggtcctatttacaagaaacatttgattttttagattcattgagtaattgatgtattcggtctaaaatatagactaaatacatcaattattc 19649628  T
Q  287 aataaatttataaagtcaattgtttcttgtaaataa 322  Q
    ||| |||  | |||||||| ||||||||||||||||    
T  19649627 aatgaatcaaaaaagtcaaatgtttcttgtaaataa 19649592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 8243784 - 8243686
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatg 331  Q
    ||||||||||||||||||||||| |||| | | ||| | ||||||  ||||||||||  || || |||||||||||| |||||||||||||| ||||||    
T  8243784 attgaataatttatgtatttggtttagattcttgactagatacatacattattcaatgtatctaaaaagtcaattgtctcttgtaaataagaccggatg 8243686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 233 - 311
Target Start/End: Complemental strand, 653339 - 653261
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgttt 311  Q
    ||||||| |||||| |||||| |||| ||| ||||| ||||||||| ||||||||||||||||| ||| || |||||||    
T  653339 attgaatgatttatctatttgatctaaaatttagaccaaatacatcaattattcaataaatttaaaaattctattgttt 653261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 233 - 319
Target Start/End: Complemental strand, 55139275 - 55139189
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaa 319  Q
    |||||||||||||||||||||||| ||||| || |  ||||||||  ||||||||||  || || |||||||||||||||| |||||    
T  55139275 attgaataatttatgtatttggtcaagaatttaaaacaaatacataaattattcaatgtatctaaaaagtcaattgtttctggtaaa 55139189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 233 - 338
Target Start/End: Original strand, 48593188 - 48593293
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatgg 332  Q
    ||||||||||| ||||||  |||||||||||||||| ||||||||  |||||||||| ||| || ||| | | |||||||||||| ||| || |||| ||    
T  48593188 attgaataattgatgtatcgggtctagaatatagaccaaatacataaattattcaatgaatctaaaaaattacttgtttcttgtatataggaccggaggg 48593287  T
Q  333 aatatt 338  Q
    | ||||    
T  48593288 agtatt 48593293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 212 - 314
Target Start/End: Complemental strand, 48593266 - 48593163
Alignment:
Q  212 aaacaattaatttttaag-ttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtt 310  Q
    |||||| |||||||| || || |||||||||||||||||||||||||| | | |||||   ||||||| ||||||||||  || || ||||||| |||||    
T  48593266 aaacaagtaattttttagattcattgaataatttatgtatttggtctatattctagacccgatacatcaattattcaatgtatctaaaaagtcacttgtt 48593167  T
Q  311 tctt 314  Q
    ||||    
T  48593166 tctt 48593163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 318
Target Start/End: Original strand, 2544493 - 2544590
Alignment:
Q  222 tttttaagttaattgaataatttatgtat-ttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaa 318  Q
    |||||| ||| ||||||||||| |||||| ||| | || | ||||||| |||||||||  |||| |||| ||| || |||||||||||||||||||||    
T  2544493 tttttaggttcattgaataattgatgtatcttgttataaattatagaccaaatacatcacttatacaatgaatctaaaaagtcaattgtttcttgtaa 2544590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 10049714 - 10049802
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||||||||||||||| |||  | | ||| | ||||||  ||||||||||  || || |||||||||||| |||||||||||    
T  10049714 attgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagtcaattgtctcttgtaaata 10049802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 19649625 - 19649713
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||| |||||||| ||||| | | |||||  |||||||| |||| ||||| ||| || ||| |||| |||||||||||||||    
T  19649625 attgaataattgatgtatttagtctatattttagaccgaatacatcaattactcaatgaatctaaaaaatcaaatgtttcttgtaaata 19649713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 302
Target Start/End: Original strand, 32711237 - 32711317
Alignment:
Q  222 tttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagt 302  Q
    |||||| ||| ||||||||||| |||||||||| ||| | ||||||| | ||||||| |||||||||| ||| || |||||    
T  32711237 tttttaggttcattgaataattgatgtatttggcctatattatagaccagatacatcaattattcaatgaatctaaaaagt 32711317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 32711304 - 32711248
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaat 289  Q
    ||||||||||| |||||| ||||||| ||||||| | ||||||||| ||||||||||    
T  32711304 attgaataattgatgtatctggtctataatataggccaaatacatcaattattcaat 32711248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 35747389 - 35747329
Alignment:
Q  236 gaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaattta 296  Q
    ||||||||||| ||||||||| | ||||||||  |||| |||| |||||||||||||||||    
T  35747389 gaataatttatttatttggtcgataatatagatcaaatgcatcaattattcaataaattta 35747329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 25910304 - 25910249
Alignment:
Q  222 tttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacat 277  Q
    ||||||| || ||||| ||||| ||||||||||| |||||||||||| ||||||||    
T  25910304 tttttaaatttattgagtaattaatgtatttggtgtagaatatagaccaaatacat 25910249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 321
Target Start/End: Original strand, 28406514 - 28406601
Alignment:
Q  234 ttgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||||||| |||||||||||||| | | |||||    |||||  |||||||||| ||  || ||||||||||||||||||||||||    
T  28406514 ttgaataattaatgtatttggtctatattctagaccgggtacataaattattcaatgaacctaaaaagtcaattgtttcttgtaaata 28406601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 35099136 - 35099065
Alignment:
Q  254 gtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagat 325  Q
    ||||||||||||||| |||||||||  |||| ||||||||| | ||||| || | |||||| ||||||||||    
T  35099136 gtctagaatatagaccaaatacatcatttatacaataaattaaaaaagttaaatatttcttataaataagat 35099065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 233 - 339
Target Start/End: Original strand, 18765304 - 18765410
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatgg 332  Q
    |||||||||| ||||||||| ||| ||||  || || ||||||||  |||||| |||  || || ||||| |||||||||||||||||| || |||| ||    
T  18765304 attgaataatgtatgtatttagtcaagaacctaaaccaaatacataaattatttaatgcatctaaaaagtaaattgtttcttgtaaataggaccggaagg 18765403  T
Q  333 aatatta 339  Q
    | |||||    
T  18765404 agtatta 18765410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 338
Target Start/End: Original strand, 23825199 - 23825300
Alignment:
Q  237 aataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatggaata 336  Q
    ||||||||||||||||||| |||| | | ||| | ||||||  ||||||||||  || || |||||||| | | ||||||||||| ||||||| ||| ||    
T  23825199 aataatttatgtatttggtttagattcttgactagatacatacattattcaatgtatctaaaaagtcaactttctcttgtaaatatgatcggagggagta 23825298  T
Q  337 tt 338  Q
    ||    
T  23825299 tt 23825300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 339
Target Start/End: Complemental strand, 53442020 - 53441903
Alignment:
Q  222 tttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||| || ||||||||||| ||||| ||||| |||||| || || |||||||||  |||| |||| |||  | ||||| || |||||||| ||||||    
T  53442020 tttttaaattcattgaataattaatgtacttggtatagaatgtataccaaatacatcatttatgcaatgaatcaaaaaagtaaaatgtttcttataaata 53441921  T
Q  322 agatcggatggaatatta 339  Q
     || |||| ||| |||||    
T  53441920 ggaccggagggagtatta 53441903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 322
Target Start/End: Original strand, 55139219 - 55139308
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataa 322  Q
    ||||||||||||||||||||| | || | | | ||| ||||||||  ||||||||||| || || |||||  |||||||||| |||||||    
T  55139219 attgaataatttatgtatttgttttaaattcttgaccaaatacataaattattcaatatatctaaaaagttgattgtttcttttaaataa 55139308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 321
Target Start/End: Complemental strand, 6087003 - 6086915
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||||||||||||||| |||  | | ||| | ||||||  ||||||||||  || || |||||||| ||| |||||||||||    
T  6087003 attgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagtcaactgtctcttgtaaata 6086915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 8243728 - 8243816
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||||||| ||||||| | ||| ||||| || || ||||||||  ||||||||||  || || ||||| |||||| |||||||||||    
T  8243728 attgaataatgtatgtatctagtcaagaatctaaaccaaatacataaattattcaatgtatctaaaaagtaaattgtctcttgtaaata 8243816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 8987775 - 8987819
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacat 277  Q
    ||||||||| |||||||||||||||||||| || || ||||||||    
T  8987775 attgaataacttatgtatttggtctagaatttaaaccaaatacat 8987819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 28565033 - 28564949
Alignment:
Q  237 aataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||||||||||| |||| | | ||| | ||||||  ||||||||||  || || |||||||||| | |||||||||||    
T  28565033 aataatttatgtatttggtttagattcttgactagatacatacattattcaatgtatataaaaagtcaattttctcttgtaaata 28564949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 48643687 - 48643735
Alignment:
Q  270 aaatacatcgattattcaataaatttataaagtcaattgtttcttgtaa 318  Q
    ||||||||  |||||||||| ||| || |||||||||||||||||||||    
T  48643687 aaatacattaattattcaatgaatctaaaaagtcaattgtttcttgtaa 48643735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 234 - 321
Target Start/End: Complemental strand, 5483962 - 5483875
Alignment:
Q  234 ttgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||||||| |||||||| ||||| ||||||||||||||||||| |||||| |||||||||| |||||||| | ||| |||||||||    
T  5483962 ttgaataattaatgtatttagtctaaaatatagacaaaatacatcaattatttaataaatttaaaaagtcaaatatttattgtaaata 5483875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 1158291 - 1158379
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||| ||||||| |||||| | | ||||| ||||||||| ||||||||||  ||||| |||||||||| |||||||||||||    
T  1158291 attgaataattaatgtattcggtctatattctagaccaaatacatcaattattcaatgtatttaaaaagtcaattatttcttgtaaata 1158379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 232 - 321
Target Start/End: Original strand, 27909020 - 27909109
Alignment:
Q  232 aattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||| ||||| ||||||  |||||| ||||||||  ||||||||| |||||||||| |||| | |||||||| |||||||||||||||    
T  27909020 aattgagtaattgatgtatccggtctaaaatatagatcaaatacatcaattattcaatgaattaaaaaagtcaaatgtttcttgtaaata 27909109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 233 - 321
Target Start/End: Complemental strand, 1158347 - 1158259
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||| ||||||||||||||||||||||||  |||||||  |||||||||| ||| || ||||| || ||| | |||||||||    
T  1158347 attgaataattgatgtatttggtctagaatatagaccgaatacattaattattcaatgaatctaaaaagttaaatgtcttttgtaaata 1158259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 222 - 321
Target Start/End: Original strand, 5483896 - 5483995
Alignment:
Q  222 tttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||| || ||| ||||||| |||||||| ||||| | | ||||| ||||||||  |||||||||  ||| || |||||||||||||||||| |||||    
T  5483896 tttttaaatttattaaataattgatgtattttgtctatattttagactaaatacattaattattcaacgaatctaaaaagtcaattgtttcttgcaaata 5483995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 7649845 - 7649908
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaattta 296  Q
    ||||||||||| |||||||||||||| |||||| || ||||| ||| |||||||||| ||||||    
T  7649845 attgaataattgatgtatttggtctaaaatatataccaaataaatcaattattcaatgaattta 7649908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 220 - 339
Target Start/End: Original strand, 30895217 - 30895336
Alignment:
Q  220 aatttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaa 319  Q
    ||||||||| || |||| | |||| ||||| ||||| |||||||||||| ||||| |||  |||| |||| |||  | |||||||| |||||||| ||||    
T  30895217 aatttttaaattcattggacaattaatgtacttggtatagaatatagaccaaatatatcatttatgcaatgaatcaaaaaagtcaaatgtttcttataaa 30895316  T
Q  320 taagatcggatggaatatta 339  Q
    |||||  ||||||| |||||    
T  30895317 taagactggatggagtatta 30895336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 314
Target Start/End: Complemental strand, 8029615 - 8029526
Alignment:
Q  225 ttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttctt 314  Q
    ||||||| ||||||||||| ||||||||| ||||  |||||| | |||||||||  ||||||||| |||||| || || | |||||||||    
T  8029615 ttaagtttattgaataattcatgtatttgatctaatatatagtctaaatacatcatttattcaatgaatttaaaatgtgatttgtttctt 8029526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 315
Target Start/End: Original strand, 9246077 - 9246170
Alignment:
Q  222 tttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttg 315  Q
    |||||| ||| ||||||||||||||||||| | |||| ||||||||| | ||| ||| |||||| ||| ||  || |||||||||| |||||||    
T  9246077 tttttaggttcattgaataatttatgtattcgatctaaaatatagaccacataaatcaattatttaattaacctaaaaagtcaattatttcttg 9246170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 5250857 - 5250809
Alignment:
Q  281 ttattcaataaatttataaagtcaattgtttcttgtaaataagatcgga 329  Q
    ||||||||||||| || || |||||||||||||||||||||||| ||||    
T  5250857 ttattcaataaatctaaaatgtcaattgtttcttgtaaataagaccgga 5250809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 339
Target Start/End: Original strand, 9077638 - 9077738
Alignment:
Q  239 taatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatggaatatt 338  Q
    ||||| |||||| | ||||||||||||||| |||| ||||  |||| |||| |||  | |||||||| | |||||| ||||||||| |||| ||||||||    
T  9077638 taattaatgtatcttgtctagaatatagaccaaatgcatcatttatgcaatgaatcaaaaaagtcaaatatttcttataaataagaccggagggaatatt 9077737  T
Q  339 a 339  Q
    |    
T  9077738 a 9077738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 338
Target Start/End: Complemental strand, 17265834 - 17265718
Alignment:
Q  222 tttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||| || || || ||||| |||||| | ||||||||||||||| |||||| ||  |||| |||| |||  | |||||||| |||||||| ||||||    
T  17265834 tttttaaattcatcgagtaattgatgtatcttgtctagaatatagactaaatacgtcatttatgcaatgaatcaaaaaagtcaaatgtttcttataaata 17265735  T
Q  322 agatcggatggaatatt 338  Q
     ||||||| ||| ||||    
T  17265734 ggatcggaaggagtatt 17265718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 321
Target Start/End: Complemental strand, 28630855 - 28630767
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||| |||| |||||||||||||||| | ||||||||| ||||||| |||| ||||| |||  | |||||||| | |||||| ||||||    
T  28630855 attgcataaattatgtatttggtctatattatagacaagatacatcaattactcaatgaataaaaaaagtcaaatttttcttataaata 28630767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 28630799 - 28630887
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||| ||||| |||||| | ||||| ||||||||| ||||||||   |||| |||| ||| || ||||||||||||||||| ||||||    
T  28630799 attgagtaattgatgtatcttgtctataatatagaccaaatacataatttatgcaatgaatctaaaaagtcaattgtttcttataaata 28630887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 30627913 - 30627829
Alignment:
Q  245 atgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcgga 329  Q
    |||||||||||||| | | ||||||| ||||||| |||| ||||||||| || ||| |||| | |||||| ||||||||| ||||    
T  30627913 atgtatttggtctatattttagacaagatacatcaattactcaataaatataaaaaatcaaatttttcttataaataagaccgga 30627829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 20703435 - 20703490
Alignment:
Q  222 tttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacat 277  Q
    |||||| ||| |||||||| || |||||||||||||| ||||||||| ||||||||    
T  20703435 tttttaggttcattgaatatttaatgtatttggtctataatatagaccaaatacat 20703490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 7405494 - 7405596
Alignment:
Q  237 aataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatggaata 336  Q
    ||||||||||||||||||| |||  | | ||| | ||||||  ||||||||||  || || |||||||||| | |||||||||||||| |||| ||| ||    
T  7405494 aataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagtcaattttctcttgtaaataagaccggagggagta 7405593  T
Q  337 tta 339  Q
    |||    
T  7405594 tta 7405596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 324
Target Start/End: Complemental strand, 7649912 - 7649810
Alignment:
Q  222 tttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||| || ||||||||||| || |||||||| || | | ||||| ||||||||| |||||||||| ||| || ||||  |||| ||| || ||||||    
T  7649912 tttttaaattcattgaataattgatttatttggtatatattttagaccaaatacatcaattattcaatgaatctaaaaagataattatttattataaata 7649813  T
Q  322 aga 324  Q
    |||    
T  7649812 aga 7649810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 321
Target Start/End: Complemental strand, 12999857 - 12999769
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||| ||||| ||||| ||||| |||||||||||  |||||||||  |||| |||| |||  | ||||| || |||||||||||||||    
T  12999857 attgagtaattaatgtacttggtatagaatatagatcaaatacatcttttatgcaatgaatcaaaaaagttaaatgtttcttgtaaata 12999769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 28863366 - 28863426
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaat 293  Q
    |||| ||||||||||||| | |||||||||||| || |||||||||  |||| ||||||||    
T  28863366 attgtataatttatgtatcttgtctagaatataaaccaaatacatcatttatgcaataaat 28863426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 30732403 - 30732439
Alignment:
Q  222 tttttaagttaattgaataatttatgtatttggtcta 258  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  30732403 tttttaagtttattgaataattgatgtatttggtcta 30732439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 237 - 341
Target Start/End: Complemental strand, 31971128 - 31971024
Alignment:
Q  237 aataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatggaata 336  Q
    ||||||||||||||||||| |||  | | ||| | ||||||  ||||||||||  || || |||||||| | | |||||||||||||| |||| ||| ||    
T  31971128 aataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagtcaactttctcttgtaaataagaccggagggagta 31971029  T
Q  337 ttatt 341  Q
    |||||    
T  31971028 ttatt 31971024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 222 - 330
Target Start/End: Original strand, 2610222 - 2610329
Alignment:
Q  222 tttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||| || ||||| ||||| |||||||||||||||||||||||| |||||||||  |||| |||| |||| | ||| || |||||||||| ||||||    
T  2610222 tttttaaattcattgagtaattgatgtatttggtctagaatatagactaaatacatcatttatgcaatgaattaaaaaattc-attgtttcttataaata 2610320  T
Q  322 agatcggat 330  Q
    ||| |||||    
T  2610321 agaccggat 2610329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 233 - 329
Target Start/End: Original strand, 6838421 - 6838517
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcgga 329  Q
    ||||| ||||| |||||| | ||||||||||||||| |||||||||  |||| |||| |||  | |||||||| |||||||| ||||||||||||||    
T  6838421 attgagtaattaatgtatcttgtctagaatatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttcttataaataagatcgga 6838517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 28677375 - 28677459
Alignment:
Q  245 atgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcgga 329  Q
    |||||||||||||| | | ||||||| ||||||| |||| ||||||||| || |||||||||| |||||| |||||| |||||||    
T  28677375 atgtatttggtctatattctagacaagatacatcaattactcaataaatctaaaaagtcaattttttcttataaataggatcgga 28677459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 321
Target Start/End: Complemental strand, 39153389 - 39153301
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||| ||||| |||||||||||||| ||||||||| |||||||||  |||| |||| |||  | |||||||| |||||||| ||||||    
T  39153389 attgagtaattgatgtatttggtctataatatagactaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttcttataaata 39153301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 341
Target Start/End: Original strand, 41850642 - 41850750
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatgg 332  Q
    ||||||||||| ||||||||||| || ||||||||  |||||||||  |||| |||| |||  | ||||| || |||||||| |||||| || |||||||    
T  41850642 attgaataattaatgtatttggtataaaatatagagcaaatacatcatttatgcaatgaatcaaaaaagtaaaatgtttcttataaataggaccggatgg 41850741  T
Q  333 aatattatt 341  Q
    | |||||||    
T  41850742 agtattatt 41850750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 233 - 319
Target Start/End: Complemental strand, 26564023 - 26563937
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaa 319  Q
    ||||||||||||| |||| ||||||||||| || || ||||||||   |||||||||| || || ||||| ||||| ||||||||||    
T  26564023 attgaataatttacgtatctggtctagaatctaaaccaaatacataatttattcaatatatctaaaaagttaattgcttcttgtaaa 26563937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 338
Target Start/End: Complemental strand, 28677419 - 28677314
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatgg 332  Q
    ||||| ||||| |||||| | ||||||||||||||| |||||||||  |||| |||| |||  | |||||||| |||||||| |||||| || |||| ||    
T  28677419 attgagtaattgatgtatcttgtctagaatatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttcttataaataggaccggaggg 28677320  T
Q  333 aatatt 338  Q
    | ||||    
T  28677319 agtatt 28677314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 239 - 324
Target Start/End: Original strand, 45533282 - 45533367
Alignment:
Q  239 taatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataaga 324  Q
    ||||| |||||| | ||||||||||||||| ||||||||   |||| |||| |||| | |||||||| |||||||| |||||||||    
T  45533282 taattaatgtatcttgtctagaatatagaccaaatacattatttatacaatgaattaaaaaagtcaaatgtttcttataaataaga 45533367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 234 - 326
Target Start/End: Complemental strand, 2400053 - 2399961
Alignment:
Q  234 ttgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatc 326  Q
    |||||||||| |||||| | ||||| ||||||||  |||||||||  |||| |||| |||  | |||||||| |||||||| |||||||||||    
T  2400053 ttgaataattgatgtatctagtctaaaatatagattaaatacatcatttatacaatgaatcaaaaaagtcaaatgtttcttataaataagatc 2399961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 329
Target Start/End: Complemental strand, 2523872 - 2523776
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcgga 329  Q
    ||||| ||||| ||||| ||||  |||||||||||| | |||||||| |||| |||| |||  | |||||||| |||||||| ||||||||| ||||    
T  2523872 attgagtaattaatgtacttggcatagaatatagaccagatacatcgtttatgcaatgaatcaaaaaagtcaaatgtttcttataaataagaccgga 2523776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 26563967 - 26564055
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||| ||||||||||||| |||| | ||||| | |||| |  ||||||||||  || |  ||||||||||||||||||||||||    
T  26563967 attgaataaattatgtatttggtttagattctagaccagatacgtaaattattcaatgtatctgaaaagtcaattgtttcttgtaaata 26564055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 321
Target Start/End: Complemental strand, 29365723 - 29365635
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||| ||||| ||||||||||| |||||||||||  |||||||||  |||| ||||  ||| | |||||||| |||||||| ||||||    
T  29365723 attgagtaattaatgtatttggtatagaatatagatcaaatacatcatttatgcaatgtattaaaaaagtcaaatgtttcttataaata 29365635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 36245434 - 36245510
Alignment:
Q  245 atgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||||||||||| | | ||||||| ||||||| |||| ||||| ||| || |||||||||| |||||| ||||||    
T  36245434 atgtatttggtctatattctagacaagatacatcaattactcaatgaatctaaaaagtcaattttttcttataaata 36245510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 40362083 - 40362003
Alignment:
Q  222 tttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagt 302  Q
    |||||| ||| ||||||| ||| |||||||||||||| |||||| |  ||||||||| |||||||||| ||| || |||||    
T  40362083 tttttaggtttattgaatgattaatgtatttggtctacaatataaatcaaatacatcaattattcaatgaatctaaaaagt 40362003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 12763279 - 12763381
Alignment:
Q  237 aataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatggaata 336  Q
    ||||||||||||||||||| |||  | | ||| | ||||||  ||||||||||  || || |||||||||| | |||||||||||||| |||| ||| ||    
T  12763279 aataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagtcaattttctcttgtaaataagaccggagggagta 12763378  T
Q  337 tta 339  Q
    |||    
T  12763379 tta 12763381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 233 - 319
Target Start/End: Complemental strand, 36245478 - 36245392
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaa 319  Q
    ||||| ||||| |||||| | ||||||||||||||| |||||||||  |||| |||| |||  | |||||||| |||||||| ||||    
T  36245478 attgagtaattgatgtatcttgtctagaatatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttcttataaa 36245392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 25780663 - 25780704
Alignment:
Q  280 attattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  25780663 attatgcaatatatttaaaaagtcaattgtttcttgtaaata 25780704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 29125155 - 29125216
Alignment:
Q  216 aattaatttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacat 277  Q
    |||||||||||   || |||||||| | ||||||||||||||| ||||||||| ||||||||    
T  29125155 aattaatttttgtattcattgaatattgtatgtatttggtctataatatagaccaaatacat 29125216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 214 - 321
Target Start/End: Original strand, 7107656 - 7107764
Alignment:
Q  214 acaattaatttttaagtta-attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttc 312  Q
    ||||||||||||| || || ||| ||||||||||||||||||| |||| | | ||| | ||||||  ||||||||||  || || |||||||| | | ||    
T  7107656 acaattaattttttagatacattaaataatttatgtatttggtttagatttttgactagatacataaattattcaatgtatctaaaaagtcaactttctc 7107755  T
Q  313 ttgtaaata 321  Q
    |||||||||    
T  7107756 ttgtaaata 7107764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 22055776 - 22055864
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||||||||||||||||  ||  ||||| || || ||||| ||  ||||||||||| |  || |||||||||||||| |||||||||    
T  22055776 attgaataatttatgtattcagtaaagaatttaaaccaaataaataaattattcaatatacgtaaaaagtcaattgttttttgtaaata 22055864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 29559520 - 29559568
Alignment:
Q  270 aaatacatcgattattcaataaatttataaagtcaattgtttcttgtaa 318  Q
    ||||||||  |||||||||| ||| || |||||||||||||||||||||    
T  29559520 aaatacattaattattcaatgaatctaaaaagtcaattgtttcttgtaa 29559568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 329
Target Start/End: Original strand, 32050126 - 32050222
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcgga 329  Q
    |||||||||| ||||||| |  || ||||  || || ||||||||  |||||| |||| || || ||||| |||||| |||||||||||||||||||    
T  32050126 attgaataatgtatgtatctactcaagaacctacaccaaatacataaattatttaatatatctaaaaagtaaattgtctcttgtaaataagatcgga 32050222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 40364693 - 40364641
Alignment:
Q  222 tttttaagttaattgaataatttatgtatttggtctagaatatagacaaaata 274  Q
    |||||| ||||||||||||||| ||||||||| |||| |||||| || |||||    
T  40364693 tttttaggttaattgaataattgatgtatttgatctataatataaaccaaata 40364641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 41088917 - 41088869
Alignment:
Q  270 aaatacatcgattattcaataaatttataaagtcaattgtttcttgtaa 318  Q
    ||||||||  |||||||||| ||| || |||||||||||||||||||||    
T  41088917 aaatacattaattattcaatgaatctaaaaagtcaattgtttcttgtaa 41088869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 47538787 - 47538847
Alignment:
Q  218 ttaatttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatc 278  Q
    ||||||||||  || ||||||||||| |||||||||||| | ||||||||| | |||||||    
T  47538787 ttaatttttagatttattgaataattgatgtatttggtcaataatatagactatatacatc 47538847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 47545344 - 47545404
Alignment:
Q  218 ttaatttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatc 278  Q
    ||||||||||  || ||||||||||| |||||||||||| | ||||||||| | |||||||    
T  47545344 ttaatttttagatttattgaataattgatgtatttggtcaataatatagactatatacatc 47545404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 200 - 315
Target Start/End: Original strand, 35922052 - 35922167
Alignment:
Q  200 tctatttaggataaacaattaatttttaag-ttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttata 298  Q
    ||||||||  ||||||||||||||||| || || ||| |||||||||| |||  ||| |||||||||||| ||||||||| |||||| ||| |||||| |    
T  35922052 tctatttacaataaacaattaattttttagattcattaaataatttatatatc-ggtatagaatatagaccaaatacatcaattatttaatgaatttaaa 35922150  T
Q  299 aagtcaattgtttcttg 315  Q
    || ||||||||||||||    
T  35922151 aattcaattgtttcttg 35922167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 216 - 321
Target Start/End: Original strand, 38393783 - 38393889
Alignment:
Q  216 aattaatttttaagtta-attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttctt 314  Q
    |||||||||||||  || |||||||||||||||||| | ||| ||||| || |  |||| |||  ||||||||||| ||||| |||||||||||||||||    
T  38393783 aattaatttttaaaatacattgaataatttatgtatatagtcaagaatctaaatcaaattcataaattattcaatatatttaaaaagtcaattgtttctt 38393882  T
Q  315 gtaaata 321  Q
    |||||||    
T  38393883 gtaaata 38393889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 4409431 - 4409375
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaat 289  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||||| || |||||||    
T  4409431 attgaataattgatgtatttggtctataatatagactaaatacatcaataattcaat 4409375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 1420703 - 1420766
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaattta 296  Q
    |||||| || |||||||||||||||| |||||||| || ||||||| |||||| ||||||||||    
T  1420703 attgaacaacttatgtatttggtctataatatagataagatacatcaattattaaataaattta 1420766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 4939478 - 4939527
Alignment:
Q  270 aaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaa 319  Q
    |||||||||||||||||||| ||| || | ||||||||||||||||||||    
T  4939478 aaatacatcgattattcaatgaatctagacagtcaattgtttcttgtaaa 4939527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 4409373 - 4409433
Alignment:
Q  231 taattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataa 291  Q
    ||||||||| ||| |||||||| ||||| | ||||||| ||||||||| ||||||||||||    
T  4409373 taattgaattattgatgtatttagtctatattatagaccaaatacatcaattattcaataa 4409433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 270 - 330
Target Start/End: Complemental strand, 6500046 - 6499986
Alignment:
Q  270 aaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggat 330  Q
    ||||||||| |||||| ||||||| || || |||||||||||||| |||||| ||||||||    
T  6500046 aaatacatcaattatttaataaatctaaaatgtcaattgtttcttataaatatgatcggat 6499986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 329
Target Start/End: Original strand, 18353254 - 18353350
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcgga 329  Q
    |||||||||| ||||||| | ||| |||| ||| || ||||||||  |||||| |||  || || ||||| |||||||||||||||||| |||||||    
T  18353254 attgaataatgtatgtatctagtcaagaacataaaccaaatacataaattatttaatgtatctaaaaagtaaattgtttcttgtaaataggatcgga 18353350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 42311908 - 42311824
Alignment:
Q  237 aataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||||||||||| ||   | | ||| ||||||||  ||||||||||  ||||| |||||||||| |||||||||||||    
T  42311908 aataatttatgtatttggtttaagtttttgactaaatacatacattattcaatgtatttaaaaagtcaattttttcttgtaaata 42311824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 321
Target Start/End: Complemental strand, 1138330 - 1138232
Alignment:
Q  222 tttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||| || ||| ||||||| |||||| | | |||||| |||||| ||||||||  ||||||||||||||  | ||||| ||||||||||| ||||||    
T  1138330 tttttaaattcattaaataattaatgtatctagactagaa-atagaccaaatacattaattattcaataaatcaaaaaagtaaattgtttcttataaata 1138232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 320
Target Start/End: Original strand, 6604396 - 6604455
Alignment:
Q  261 atatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaat 320  Q
    |||||||| ||||| ||  |||||||||| |||||| ||||||||||||||||| |||||    
T  6604396 atatagactaaataaattaattattcaatgaatttaaaaagtcaattgtttcttataaat 6604455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 340
Target Start/End: Complemental strand, 13789834 - 13789727
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatgg 332  Q
    ||||||||||| ||||| ||||| |||||| ||||| |||||||||  |||| |||| |||  | ||||| || |||||||| |||||| || |||| ||    
T  13789834 attgaataattaatgtacttggtatagaatgtagaccaaatacatcatttatgcaatgaatcaaaaaagtaaaatgtttcttataaataggaccggaggg 13789735  T
Q  333 aatattat 340  Q
    | ||||||    
T  13789734 agtattat 13789727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 239 - 321
Target Start/End: Complemental strand, 21488379 - 21488297
Alignment:
Q  239 taatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||| |||||||| ||||||||||||||| ||||||||   |||| |||| |||| | |||||||| | |||||| ||||||    
T  21488379 taattaatgtattttgtctagaatatagaccaaatacattatttatgcaatgaattaaaaaagtcaaatatttcttataaata 21488297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 233 - 327
Target Start/End: Original strand, 38394474 - 38394568
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcg 327  Q
    ||||||||||| ||||| ||||| |||||| ||||| |||||||||  |||| |||| |||  | ||||| || |||||||| |||||| |||||    
T  38394474 attgaataattaatgtacttggtatagaatgtagaccaaatacatcatttatgcaatgaatcaaaaaagtaaaatgtttcttataaataggatcg 38394568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 26164016 - 26163975
Alignment:
Q  280 attattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||||||||||| || ||||||||||||||||| ||||||    
T  26164016 attattcaataaatctaaaaagtcaattgtttcttataaata 26163975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 338
Target Start/End: Original strand, 29374216 - 29374321
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatgg 332  Q
    ||||||||||||||||||||||| |||  | | ||| | ||||||  ||||||||||  || || |||||||| ||| ||||||||||| || |||| ||    
T  29374216 attgaataatttatgtatttggtttaggttcttgacgagatacatacattattcaatgtatctaaaaagtcaactgtctcttgtaaataggaccggaggg 29374315  T
Q  333 aatatt 338  Q
    | ||||    
T  29374316 agtatt 29374321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 40740410 - 40740353
Alignment:
Q  264 tagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||| ||||||||| |||||| ||||||| || ||| || |||||||||||||||||    
T  40740410 tagaccaaatacatcaattatttaataaatctaaaaaatcgattgtttcttgtaaata 40740353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 321
Target Start/End: Complemental strand, 26898293 - 26898205
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||||||| ||||||||| ||| ||||  || || ||||||||  |||||| |||  ||||| ||||| |||||| |||||||||||    
T  26898293 attgaataatgtatgtatttagtcaagaacctaaaccaaatacataaattatttaatgtatttaaaaagtaaattgtctcttgtaaata 26898205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 329
Target Start/End: Complemental strand, 29374272 - 29374176
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcgga 329  Q
    |||||||||| ||||||| | ||| ||||  || || ||||||||  ||||||||||  || || ||||| |||||| ||||||||||| |||||||    
T  29374272 attgaataatgtatgtatctcgtcaagaacctaaaccaaatacataaattattcaatgtatctaaaaagtaaattgtctcttgtaaataggatcgga 29374176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 321
Target Start/End: Complemental strand, 37699882 - 37699794
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||||||||||||||| |||  | | ||| | ||||||  ||||||||||  || || |||||||| ||| |||||||||||    
T  37699882 attgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagtcaactgtctcttgtaaata 37699794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 38394518 - 38394434
Alignment:
Q  245 atgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcgga 329  Q
    |||||||||||||| | | || || || |||||  |||||||||| ||| || |||||||||| |||||| |||||| |||||||    
T  38394518 atgtatttggtctacattctataccaagtacattaattattcaatgaatctaaaaagtcaattttttcttataaataggatcgga 38394434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 40740423 - 40740463
Alignment:
Q  281 ttattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||||||||||| | ||| ||||||||||||||||||||    
T  40740423 ttattcaataaattaaaaaaatcaattgtttcttgtaaata 40740463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 25021316 - 25021365
Alignment:
Q  272 atacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||| |||||||||||||| || ||||||||||||||||||||||||    
T  25021316 atacatcaattattcaataaatctaaaaagtcaattgtttcttgtaaata 25021365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 222 - 339
Target Start/End: Complemental strand, 26760286 - 26760169
Alignment:
Q  222 tttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||| || ||||| | ||| ||||| ||||| |||||||||||| |||||||||  ||||||||| |||  | |||||||| |||||||| ||||||    
T  26760286 tttttaaattcattgagtcattaatgtacttggtatagaatatagaccaaatacatcatttattcaatgaatcaaaaaagtcaaatgtttcttataaata 26760187  T
Q  322 agatcggatggaatatta 339  Q
     || | || |||||||||    
T  26760186 ggacccgagggaatatta 26760169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 222 - 339
Target Start/End: Original strand, 26924248 - 26924365
Alignment:
Q  222 tttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||| || ||||| | ||| ||||| ||||| |||||||||||| |||||||||  ||||||||| |||  | |||||||| |||||||| ||||||    
T  26924248 tttttaaattcattgagtcattaatgtacttggtatagaatatagaccaaatacatcatttattcaatgaatcaaaaaagtcaaatgtttcttataaata 26924347  T
Q  322 agatcggatggaatatta 339  Q
     || |||| ||| |||||    
T  26924348 ggaccggagggagtatta 26924365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 26733883 - 26733799
Alignment:
Q  237 aataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||||||||||| | ||| |||||||| || |||||||| ||||||| |||  || || ||||| ||||||||||||||||||    
T  26733883 aataatttatgtatctagtcaagaatataaaccaaatacatagattatttaatgtatctaaaaagttaattgtttcttgtaaata 26733799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 34332522 - 34332610
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||| ||||| |||||||| ||||||||||||||| |||||||||  |||| |||| |||  | |||||||| |||||||| ||||||    
T  34332522 attgagtaattgatgtattttgtctagaatatagaccaaatacatcatttatccaatgaatcaaaaaagtcaaatgtttcttataaata 34332610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 49944879 - 49944967
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||| |||||| | ||||||||||||||| |||||||||  |||| |||| |||  | ||| |||| |||||||||||||||    
T  49944879 attgaataattgatgtatcttgtctagaatatagaccaaatacatcatttatacaatgaatcaaaaaaatcaaatgtttcttgtaaata 49944967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 27422970 - 27422921
Alignment:
Q  272 atacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||| |||| | ||||||| |||||||||||||||||||||||||||    
T  27422970 atacatcaattaattaataaatctataaagtcaattgtttcttgtaaata 27422921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 11386201 - 11386288
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||| |||| | ||||||||||||||||| |||||||||  |||| |||| || | | |||||||| |||||||| ||||||    
T  11386201 attgaataattgatgtttctggtctagaatatagacgaaatacatcatttatgcaatgaa-tcaaaaagtcaaatgtttcttataaata 11386288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 321
Target Start/End: Complemental strand, 15286111 - 15286023
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||| ||||| ||||| |||||||||||  |||||||||  ||||  ||| |||| | |||||||| |||||||| ||||||    
T  15286111 attgaataattaatgtacttggtatagaatatagatcaaatacatcatttatataatgaattaaaaaagtcaaatgtttcttataaata 15286023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 38830529 - 38830617
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||||||||||||||| |||  | | ||| | ||||||  ||||||||||  ||||| |||||||| ||| |||||||||||    
T  38830529 attgaataatttatgtatttggtttaggttcttgactagatacatatattattcaatgtatttaaaaagtcaactgtctcttgtaaata 38830617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 50155356 - 50155432
Alignment:
Q  245 atgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||||||||||| | ||||||| ||||||||| |||| ||||| ||| || |||||||| | |||||| ||||||    
T  50155356 atgtatttggtctatattatagaccaaatacatcaattactcaatgaatctaaaaagtcaactttttcttataaata 50155432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 327
Target Start/End: Complemental strand, 2855136 - 2855093
Alignment:
Q  284 ttcaataaatttataaagtcaattgtttcttgtaaataagatcg 327  Q
    ||||||||||||| ||||||||||||||||| ||||||| ||||    
T  2855136 ttcaataaatttaaaaagtcaattgtttcttataaataaaatcg 2855093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 339
Target Start/End: Complemental strand, 26823192 - 26823133
Alignment:
Q  280 attattcaataaatttataaagtcaattgtttcttgtaaataagatcggatggaatatta 339  Q
    ||||||||||||||||| ||||| |||| ||| || |||||| ||||||||||| |||||    
T  26823192 attattcaataaatttaaaaagttaattttttattataaataggatcggatggagtatta 26823133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 233 - 311
Target Start/End: Complemental strand, 15285538 - 15285460
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgttt 311  Q
    ||||||||||| ||||||||| ||| |||||| ||  | ||||||| |||||||||||||| || ||| |||| |||||    
T  15285538 attgaataattgatgtatttgatcttgaatatggatcagatacatcaattattcaataaatctaaaaattcaactgttt 15285460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 28359037 - 28358995
Alignment:
Q  220 aatttttaagttaattgaataatttatgtatttggtctagaat 262  Q
    ||||||||| || ||||||||||| ||||||||||||||||||    
T  28359037 aatttttaaattcattgaataattaatgtatttggtctagaat 28358995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 233 - 327
Target Start/End: Complemental strand, 38738033 - 38737939
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcg 327  Q
    ||||| ||||| |||||| | |||||||||||| || |||||||||  |||| |||| |||  | |||||||| |||||||| |||||| |||||    
T  38738033 attgagtaattgatgtatcttgtctagaatataaaccaaatacatcctttatgcaatgaatcaaaaaagtcaaatgtttcttataaataggatcg 38737939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 245 - 331
Target Start/End: Complemental strand, 49944923 - 49944837
Alignment:
Q  245 atgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatg 331  Q
    |||||||||||||| | | ||||||| ||||||| |||||||||| ||| || ||||| || | |||||| |||||| || ||||||    
T  49944923 atgtatttggtctatattctagacaagatacatcaattattcaatgaatctaaaaagttaaatttttcttataaataggaccggatg 49944837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 50155400 - 50155355
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatc 278  Q
    ||||| ||||| |||||||||||||| ||||||||| |||||||||    
T  50155400 attgagtaattgatgtatttggtctataatatagaccaaatacatc 50155355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 14281636 - 14281724
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||||||||||||||| |||  | | ||| | ||||||  ||||||||||  || || |||||||| ||| |||||||||||    
T  14281636 attgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagtcaactgtctcttgtaaata 14281724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 23398126 - 23398214
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||||||||||||||| |||  | | ||| | ||||||  ||||||||||  || || |||||||||||| | |||||||||    
T  23398126 attgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagtcaattgtctattgtaaata 23398214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 29892176 - 29892264
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||||||||||  |||||| ||| || || | ||| ||| |||||| ||| ||| || ||||||||||||||| | ||||||    
T  29892176 attgaataatttatgtatccggtctaaaatctaaaccagatatatcaattattgaatgaatctaaaaagtcaattgtttcctataaata 29892264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 34332566 - 34332506
Alignment:
Q  245 atgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaa 305  Q
    |||||||||||||| | | ||||||||||||||| |||| ||||| ||| || ||||||||    
T  34332566 atgtatttggtctatattctagacaaaatacatcaattactcaatgaatctaaaaagtcaa 34332506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 321
Target Start/End: Complemental strand, 44939168 - 44939080
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||| ||||| |||||| |  |||||||||||||| |||||||||  |||| |||| |||  | |||||||| |||||||| ||||||    
T  44939168 attgagtaattgatgtatctaatctagaatatagaccaaatacatcatttatacaatgaataaaaaaagtcaaatgtttcttataaata 44939080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 48377892 - 48377832
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaat 293  Q
    ||||||||| | | ||||||| | || ||||||||| ||||||||| ||||||||||||||    
T  48377892 attgaataagtgacgtatttgatttataatatagactaaatacatcaattattcaataaat 48377832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 321
Target Start/End: Complemental strand, 10396894 - 10396806
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||| |||||||||||||||| |||||||||||| | ||||||   ||||||||| ||| || ||||| |||||||| || ||||||    
T  10396894 attgaacaatttatgtatttggtttagaatatagaccatatacattagttattcaattaatctaaaaagtaaattgttttttataaata 10396806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 8793765 - 8793853
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||| ||||| |||||||||||||| ||||||||| |||||||||  |||| |||| |||  | |||||||| | |||||| ||||||    
T  8793765 attgagtaattgatgtatttggtctataatatagactaaatacatcatttatgcaatgaatcaaaaaagtcaaatatttcttataaata 8793853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 10839809 - 10839908
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatgg 332  Q
    ||||||||||| ||||| ||||| |||||||||||| |||||||||  |||| |||| || | | ||||| || |||||||| |||||| || |||||||    
T  10839809 attgaataattaatgtacttggtatagaatatagaccaaatacatcatttatgcaatgaa-tcaaaaagttaaatgtttcttataaataggaccggatgg 10839907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 321
Target Start/End: Original strand, 41915644 - 41915728
Alignment:
Q  237 aataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||||||||||| |||| ||| ||| | ||||||  ||||||||||  || || |||||||||| | |||||||||||    
T  41915644 aataatttatgtatttggtttagattattgactagatacatacattattcaatgtatctaaaaagtcaattttctcttgtaaata 41915728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 321
Target Start/End: Original strand, 5031499 - 5031598
Alignment:
Q  222 tttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||| || ||| | ||||| |||||| | ||||||||||||||| |||||||||  |||| |||| |||  | |||||||| |||||||| ||||||    
T  5031499 tttttaaattcattaagtaattgatgtatcttgtctagaatatagactaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttcttataaata 5031598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 340
Target Start/End: Complemental strand, 7693135 - 7693028
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatgg 332  Q
    ||||| ||||| ||||||||||| || ||||||||| |||||||||  |||| |||| |||  | ||||| || |||||||| |||||| ||| ||| ||    
T  7693135 attgagtaattaatgtatttggtataaaatatagactaaatacatcatttatgcaatgaatcaaaaaagtaaaatgtttcttataaataggattggaggg 7693036  T
Q  333 aatattat 340  Q
    | ||||||    
T  7693035 agtattat 7693028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 216 - 293
Target Start/End: Complemental strand, 6354767 - 6354689
Alignment:
Q  216 aattaatttttaag-ttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaat 293  Q
    ||||||||||| || || ||||||||||||||||||| | ||||||||||| |  | ||||||  ||||||||||||||    
T  6354767 aattaattttttagattcattgaataatttatgtattcgatctagaatatatatcatatacattaattattcaataaat 6354689  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 239 - 321
Target Start/End: Complemental strand, 35149764 - 35149682
Alignment:
Q  239 taatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||| |||||| | ||||||||||||||| |||||||||  |||| |||| |||  | |||||||| |||||||| ||||||    
T  35149764 taattaatgtatcttgtctagaatatagaccaaatacatcatttatgcaattaatcaaaaaagtcaaatgtttcttataaata 35149682  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 233 - 331
Target Start/End: Original strand, 41569142 - 41569240
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatg 331  Q
    |||||||||| ||||||| | ||| ||||  |  || ||||||||  |||||| |||| || || ||||| |||||||||||||||||| |||||||||    
T  41569142 attgaataatgtatgtatctagtcaagaacctcaaccaaatacataaattatttaatatatctaaaaagtaaattgtttcttgtaaataggatcggatg 41569240  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 3236420 - 3236338
Alignment:
Q  245 atgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcgga 329  Q
    |||||||||||||| | | || || | ||||||| |||||||||| |||||| |||||||||| ||||   ||||||||||||||    
T  3236420 atgtatttggtctaaattttaaactagatacatcaattattcaatgaatttaaaaagtcaattttttc--ataaataagatcgga 3236338  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 314
Target Start/End: Original strand, 9550203 - 9550236
Alignment:
Q  281 ttattcaataaatttataaagtcaattgtttctt 314  Q
    |||||||||||||||| |||||||||||||||||    
T  9550203 ttattcaataaatttaaaaagtcaattgtttctt 9550236  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 341
Target Start/End: Original strand, 24822816 - 24822877
Alignment:
Q  280 attattcaataaatttataaagtcaattgtttcttgtaaataagatcggatggaatattatt 341  Q
    ||||| |||||||| || |||||||||| |||||| |||||| || |||| |||||||||||    
T  24822816 attatacaataaatctaaaaagtcaattttttcttataaataggaccggagggaatattatt 24822877  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 26229668 - 26229725
Alignment:
Q  235 tgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaa 292  Q
    |||||||||||||||||||||||| |||||||   | ||||||| ||||| |||||||    
T  26229668 tgaataatttatgtatttggtctataatataggtcagatacatcaattatccaataaa 26229725  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 322
Target Start/End: Complemental strand, 32597600 - 32597511
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataa 322  Q
    ||||| ||||| |||||  |||| || |||||||||||||||||||| |||  |||| |||  | |||||||| |||||||| |||||||    
T  32597600 attgagtaattaatgtacgtggtataaaatatagacaaaatacatcgtttacgcaatgaatcaaaaaagtcaaatgtttcttataaataa 32597511  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 338
Target Start/End: Complemental strand, 40465336 - 40465235
Alignment:
Q  237 aataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatggaata 336  Q
    ||||||||||||||||||| |||  | | ||| | ||||||  ||||||||||  || || |||||||||| | ||||||||||| ||||||| ||| ||    
T  40465336 aataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagtcaattttctcttgtaaataggatcggagggagta 40465237  T
Q  337 tt 338  Q
    ||    
T  40465236 tt 40465235  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 1364149 - 1364205
Alignment:
Q  221 atttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacat 277  Q
    ||||||||||| ||||||||||| |||||||||| ||| ||| || || ||||||||    
T  1364149 atttttaagtttattgaataattaatgtatttggactacaatgtaaactaaatacat 1364205  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 237 - 321
Target Start/End: Original strand, 7668241 - 7668325
Alignment:
Q  237 aataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||||||||||| |||  | | ||| ||||||||  ||||||||||  ||||| |||| ||||| | |||||||||||    
T  7668241 aataatttatgtatttggtttaggttcttgactaaatacatacattattcaatgtatttaaaaagacaattttctcttgtaaata 7668325  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 9678854 - 9678782
Alignment:
Q  222 tttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatt 294  Q
    |||||| ||| ||||||||| |||||||||||||  | ||||||||| |||||||| | ||||| || |||||    
T  9678854 tttttatgttcattgaataaattatgtatttggtgaataatatagaccaaatacatagtttattaaacaaatt 9678782  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 245 - 321
Target Start/End: Complemental strand, 16008613 - 16008537
Alignment:
Q  245 atgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||||| ||||||||||| ||| ||||||||   |||| ||||| ||| | |||||||| |||||||| ||||||    
T  16008613 atgtattttgtctagaatattgaccaaatacattatttatgcaatagattaaaaaagtcaaatgtttcttataaata 16008537  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 329
Target Start/End: Complemental strand, 25848069 - 25847973
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcgga 329  Q
    |||||||||| ||||||||| ||| ||||  || || ||||||||  |||||| |||  || || ||||| |||||| ||||||||||| |||||||    
T  25848069 attgaataatgtatgtatttagtcaagaacctaaaccaaatacataaattatttaatgtatctaaaaagtaaattgtctcttgtaaataggatcgga 25847973  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 237 - 321
Target Start/End: Original strand, 25848017 - 25848101
Alignment:
Q  237 aataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||||||||||| |||  | | ||| ||||||||  ||||||||||  || || |||||||| ||| |||||||||||    
T  25848017 aataatttatgtatttggtttaggttcttgactaaatacatacattattcaatgtatctaaaaagtcaactgtctcttgtaaata 25848101  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 237 - 341
Target Start/End: Original strand, 33642508 - 33642612
Alignment:
Q  237 aataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatggaata 336  Q
    ||||||||||||||||||| |||  | | ||| | ||||||  ||||||||||  || || ||| |||| | | |||||||||||||| |||||||| ||    
T  33642508 aataatttatgtatttggtttaggttcttgactagatacatatattattcaatgtatctaaaaaatcaactttctcttgtaaataagaccggatggagta 33642607  T
Q  337 ttatt 341  Q
    |||||    
T  33642608 ttatt 33642612  T

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Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 264 - 324
Target Start/End: Complemental strand, 34711152 - 34711092
Alignment:
Q  264 tagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataaga 324  Q
    ||||||||||||||| |||| ||||| ||| || |||||||||| ||| || |||||||||    
T  34711152 tagacaaaatacatcaattactcaatgaatctaaaaagtcaatttttttttataaataaga 34711092  T

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Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 43135090 - 43135178
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||||||||||||||| |||  | | ||| | ||||||  ||||||||||  || || |||||||| ||| |||||||||||    
T  43135090 attgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagtcaactgtctcttgtaaata 43135178  T

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Target: scaffold0767 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 3794 - 3719
Alignment:
Q  264 tagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataagatcggatggaatatta 339  Q
    ||||||||||||||| |||| ||||||||| || |||||||| | |||||| || |||||| |||| |||||||||    
T  3794 tagacaaaatacatcaattactcaataaatgtaaaaagtcaaatttttcttatatataagaccggagggaatatta 3719  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 233 - 311
Target Start/End: Original strand, 423294 - 423372
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgttt 311  Q
    ||||||||||| ||| || |||  ||||||||||||  |||||||| |||||||||| ||| || ||||||||||||||    
T  423294 attgaataattgatgcatatggattagaatatagaccgaatacatcaattattcaatgaatctaaaaagtcaattgttt 423372  T

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Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 492351 - 492439
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    |||||||||| ||||||||| ||| ||||  || || ||||||||  |||||| |||  || || ||||| ||||||||||||||||||    
T  492351 attgaataatgtatgtatttagtcaagaacctaaaccaaatacataaattatttaatgtatctaaaaagtaaattgtttcttgtaaata 492439  T

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Target: scaffold0025 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 311
Target Start/End: Complemental strand, 66063 - 65974
Alignment:
Q  222 tttttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgttt 311  Q
    |||||| ||| ||||||||||||||||||| ||| || ||||||||| | ||||||  ||| |||||| ||| || ||| ||||||||||    
T  66063 tttttaggttcattgaataatttatgtattcggtttaaaatatagactagatacatgaatttttcaatgaatctaaaaaatcaattgttt 65974  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 321
Target Start/End: Complemental strand, 156870 - 156782
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||| ||||| ||||| ||||| |||||||||||| ||||| |||| |||| |||| |||| | ||||| || |||||||| ||||||    
T  156870 attgagtaattaatgtacttggtatagaatatagaccaaatatatcgtttatgcaatgaattaaaaaagttaaatgtttcttataaata 156782  T

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Target: scaffold0531 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 6888 - 6959
Alignment:
Q  225 ttaagttaattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaattta 296  Q
    ||||||| ||||||||||| ||||||||| ||||  |||||| | |||||||||  ||||||||| ||||||    
T  6888 ttaagtttattgaataattcatgtatttgatctaatatatagtctaaatacatcatttattcaatgaattta 6959  T

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Target: scaffold0067 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 321
Target Start/End: Complemental strand, 5319 - 5230
Alignment:
Q  232 aattgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaata 321  Q
    ||||||||||| ||||||||| ||| ||||  || || ||||| ||  |||||| |||| ||| | ||||| ||||||||||||||||||    
T  5319 aattgaataatatatgtatttagtcaagaacctaaaccaaatatataaattatttaatatattaaaaaagtaaattgtttcttgtaaata 5230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 322
Target Start/End: Original strand, 183838 - 183927
Alignment:
Q  233 attgaataatttatgtatttggtctagaatatagacaaaatacatcgattattcaataaatttataaagtcaattgtttcttgtaaataa 322  Q
    |||||||||||||||||||||||| | ||| || ||   ||||||  ||||||||||| ||||| ||||| ||||  || ||||||||||    
T  183838 attgaataatttatgtatttggtcaaaaatctaaacttgatacataaattattcaatatatttaaaaagttaattaatttttgtaaataa 183927  T

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