View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5034-Insertion-8 (Length: 608)
Name: NF5034-Insertion-8
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034-Insertion-8 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 278 - 608
Target Start/End: Original strand, 50073610 - 50073940
Alignment:
| Q |
278 |
tagatttaattacctccaacaaaagttaatttcttaatggttccagggccaccatctccttcaagagtttctgctttctcaatgaatcgtggtaaagctt |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
50073610 |
tagatttaattacctccaacaaaagttaatttcttaatggttcctgggccaccatctccttcaagagtttctgctttctcgatgaatcgtggtaaagctt |
50073709 |
T |
|
| Q |
378 |
tggggtagatgatgtttccatcttcgacaatgcctctgtatagtttttcagcagagagagaggaaacatactcgctttctgaagtgataacacccatgat |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50073710 |
tggggtagatgatgtttccatcttcgacaatgcctctgtatagtttttcagcagagagagaggaaacatactcgctttctgaagtgataacacccatgat |
50073809 |
T |
|
| Q |
478 |
aannnnnnnactcttaagaaagttaattaagatcaatgttctctttcttttggtgtggattgatatgttggcatatgcgttaatttataggcgctgcaat |
577 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50073810 |
aattttttgactcttaagaaagttaattaagatcaatgttctctttcttttggtgtggattgatatgttggcatatgcgttaatttataggcgctgcaat |
50073909 |
T |
|
| Q |
578 |
gcagcaataggtcactgtggagttaccccta |
608 |
Q |
| |
|
| |||||||||||||||||||||| |||||| |
|
|
| T |
50073910 |
ggagcaataggtcactgtggagttgccccta |
50073940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 50072990 - 50073132
Alignment:
| Q |
7 |
actcaaaaactattttctctagaggttgatctgacaaagcaataccttcatatacactgtaagtgtacgcacagttttctctgtcaaccatatctatgtg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50072990 |
actcaaaaactattttctctagaggttgatctgacaaagcaataccttcatatacactgtaagtgtacgcacagttttctctgtcaaccatatctatgtg |
50073089 |
T |
|
| Q |
107 |
ttgcttcgtagacccaaaatctgctcacacagttaattaagcg |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
50073090 |
ttgcttcgtagacccaaaatctgctcacacaattaattaagcg |
50073132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 190 - 286
Target Start/End: Original strand, 50073173 - 50073265
Alignment:
| Q |
190 |
agctgtttcataaattaacatggatagtatagcttataaaatagtgagaggaataagtatctatatatatggtcaaacaaacttaatatagatttaa |
286 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
50073173 |
agctgtttcataaattaacatggatagcatagcttataaaatagtgagaggaataagtatc----tatatggtcaaacaaacttaatttagatttaa |
50073265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University