View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5034-Insertion-9 (Length: 585)
Name: NF5034-Insertion-9
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034-Insertion-9 |
 | |
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| [»] chr7 (3 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 133 - 585
Target Start/End: Original strand, 9333124 - 9333597
Alignment:
| Q |
133 |
aaagaaggctacacgaaaccaatgttgtctccatatgttggaaaaaa-tcatatgcagggaattagaaacagataatatgcatagaaatagaaacaaata |
231 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9333124 |
aaagaaggctacaccaaaccaatgttgtctccatatgttggaaaaaaatcatatgtagggaattagaaacagataacatgcatagaaatagaaacaaata |
9333223 |
T |
|
| Q |
232 |
ataccttaatttttcttgtgacttctttatcccatgcttcttcagttcttcctgaaacaaa----------------taaggacccacctataacacaaa |
315 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9333224 |
ataccttaattttccttgtgacttctgtatcccatgcttcttcagttcttcctgaaacaaaaaatgatgaataaaaataaggacccacctataacacaaa |
9333323 |
T |
|
| Q |
316 |
tgaagaaaacaggaaaaaatgagtagaacataaaatgatcataaaattagtaagnnnnnnnnn----aacattaattattaagttaatccttcatactct |
411 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||| | | ||||||| ||||||||||||||||||||| |
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|
| T |
9333324 |
tgaagaaaacagaaaaaaatgagtacaacataaaatgatcataaaattagtaagtttttttttttttacctttaattagtaagttaatccttcatactct |
9333423 |
T |
|
| Q |
412 |
ataatgaggtattttcacagttaattacatctggagttgatgatcatttggccgcaagtaagaagaaatcgatcccatgaattgtttatccatgatatac |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
9333424 |
ataatgaggtattttcacagttaattacatctggagttgatgatcatttggccacaagtacgaagaaatcgaccccatgaattgtttatccatgatatac |
9333523 |
T |
|
| Q |
512 |
gttgtgaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttgaatattatttcaattttagga |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9333524 |
gttgtgaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttgaatattctttcaattttagga |
9333597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 9332982 - 9333087
Alignment:
| Q |
11 |
tggaacaatagaaccgctcattcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatcagttactttgagttatcagaaatta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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|
| T |
9332982 |
tggaacaatagaaccgctcattcctcaattctcattagcaattagcaaatatagatagaataactgccatagatcagttactttgagttatcagaaatta |
9333081 |
T |
|
| Q |
111 |
catatg |
116 |
Q |
| |
|
|||||| |
|
|
| T |
9333082 |
catatg |
9333087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 27273125 - 27273164
Alignment:
| Q |
14 |
aacaatagaaccgctcattcctcaattctcattagcaatt |
53 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
27273125 |
aacaatagagccgctcaatcctcaattctcattagcaatt |
27273164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 133 - 585
Target Start/End: Original strand, 22158065 - 22158532
Alignment:
| Q |
133 |
aaagaaggctacacgaaaccaatgttgtctccatatgttggaaaaaatcatatgcagggaattagaaacagataatatgcatagaaatagaaacaaataa |
232 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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|
| T |
22158065 |
aaagaaggctacaccaaacaaatgttttctccatatgttggaaaaaatcatatgcagggaattagaaagagataatatgaatagaaatagaaacaaataa |
22158164 |
T |
|
| Q |
233 |
taccttaatttttcttgtgacttctttatcccatgcttcttcagttcttcctgaaacaaa----------------taaggacccacctataacacaaat |
316 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||| |
|
|
| T |
22158165 |
taccttaattttccttatgacttctgtatcccatgcttcttcagttctttccgaaacaaaaaatgatgaataaagataaggacccacctataacacaaat |
22158264 |
T |
|
| Q |
317 |
gaagaaaacaggaaaaaatgagtagaacataaaatgatcataaaattagtaagnnnnnnnnnaacattaattattaagttaatccttcatactctataat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
22158265 |
gaagaaaacaggaaaaaatgagtagaacataatatgataataaaattagtaagtttttttt-aacgttaattagtaagttaatccttcatactctataat |
22158363 |
T |
|
| Q |
417 |
gaggtattttcacagttaattacatctggagttgatgatcatttggccgcaagtaagaagaaatcgatcccatgaattgtttatccatgatatacgttgt |
516 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||| | ||||||||||||| |
|
|
| T |
22158364 |
gaggtatttccacatttaattacatctggagttgatgatcatttggccgcaagtaagaagaaatcaacctaatgaattgtttattcctgatatacgttgt |
22158463 |
T |
|
| Q |
517 |
gaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttgaatattatttcaattttagga |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22158464 |
gaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttgaatattctttcaattttagga |
22158532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 22157923 - 22158028
Alignment:
| Q |
11 |
tggaacaatagaaccgctcattcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatcagttactttgagttatcagaaatta |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
22157923 |
tggaacaatagaaccgctcattcctcaattctcattagcaattagaaaatatagatagaaaaactgccatacattagttactttgagttatcagaaatta |
22158022 |
T |
|
| Q |
111 |
catatg |
116 |
Q |
| |
|
|||||| |
|
|
| T |
22158023 |
catatg |
22158028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 9765782 - 9765713
Alignment:
| Q |
32 |
tcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatcagttactttgagttat |
101 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||| || ||| |||||||||||||||| ||||||| |
|
|
| T |
9765782 |
tcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatcagttacttagagttat |
9765713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 383 - 585
Target Start/End: Complemental strand, 51861669 - 51861467
Alignment:
| Q |
383 |
ttaattattaagttaatccttcatactctataatgaggtattttcacagttaattacatctggagttgatgatcatttggccgcaagtaagaagaaatcg |
482 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51861669 |
ttaattagtaagttaatccttcatactctataatgaggtatttccacggttaattacatctggagttgatgatcatttggccgcaagtaagaagaaatcg |
51861570 |
T |
|
| Q |
483 |
atcccatgaattgtttatccatgatatacgttgtgaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttgaatattatttcaatttta |
582 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
51861569 |
actccatgaattgtttatccctgatatacgttgtgaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttaaatattctttcaatttta |
51861470 |
T |
|
| Q |
583 |
gga |
585 |
Q |
| |
|
||| |
|
|
| T |
51861469 |
gga |
51861467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 136 - 369
Target Start/End: Complemental strand, 51861945 - 51861698
Alignment:
| Q |
136 |
gaaggctacacgaaaccaatgttgtctccatatgttggaaaaaatcatatgcagggaattagaaacagataatatgcatagaaatagaaacaaataatac |
235 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51861945 |
gaaggctacaccaaaccaacgttgtctccatatgttggaaaaaatcatatg---ggaattagaaacagataatatgcatagaaatagaaacaaataatac |
51861849 |
T |
|
| Q |
236 |
cttaatttttcttgtgacttctttatcccatgcttcttcagttcttcctgaaacaa----------------ataaggacccacctataacacaaatgaa |
319 |
Q |
| |
|
||||||||| ||| ||| |||| |||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
51861848 |
cttaattttccttatgatttctgtatcccatgcttgttcagttcttcctggaacaaaaaatgatgaataaagataaggacccacctataacacaaatgaa |
51861749 |
T |
|
| Q |
320 |
gaaaacagg-aaaaaatgagtagaacataaaatgatcataaaattagtaag |
369 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51861748 |
gaaaacaggaaaaaaatgagtagaacataaaatgatcataaaattagtaag |
51861698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 51862090 - 51861985
Alignment:
| Q |
11 |
tggaacaatagaaccgctcattcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatcagttactttgagttatcagaaatta |
110 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
51862090 |
tggaacaatagaatcgctcattcctcaattctcattagcatttagcaaatatagatagaaaaactgccatagatcagttactttgagttatcagaaatta |
51861991 |
T |
|
| Q |
111 |
catatg |
116 |
Q |
| |
|
|||||| |
|
|
| T |
51861990 |
catatg |
51861985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 7807638 - 7807689
Alignment:
| Q |
14 |
aacaatagaaccgctcattcctcaattctcattagcaattagcaaatataga |
65 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||||| ||||||||||| |
|
|
| T |
7807638 |
aacaatagtaccgctcaatcctcaattcttattagcaatcggcaaatataga |
7807689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 43651710 - 43651807
Alignment:
| Q |
14 |
aacaatagaaccgctcattcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatcagttactttgagttatcagaaattac |
111 |
Q |
| |
|
||||||||||| | ||| |||||||||||||||||||||| ||||||||||||||| || ||| |||||||||||||||| ||||||| |||| |||| |
|
|
| T |
43651710 |
aacaatagaactgttcaatcctcaattctcattagcaattggcaaatatagatagagaacctgtcataaatcagttacttagagttattagaagttac |
43651807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 21114919 - 21115016
Alignment:
| Q |
14 |
aacaatagaaccgctcattcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatcagttactttgagttatcagaaattac |
111 |
Q |
| |
|
||||||||||| | ||| |||||||||||||||||||||| ||||||||||||||| || || |||||||||||||||| ||||||| |||| |||| |
|
|
| T |
21114919 |
aacaatagaactgttcaatcctcaattctcattagcaattggcaaatatagatagagaacctatcataaatcagttacttagagttattagaagttac |
21115016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 81426 - 81348
Alignment:
| Q |
17 |
aatagaaccgctcattcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatcagttactttg |
95 |
Q |
| |
|
||||||||| |||| |||||||||||||| |||||| ||||||||| ||||||||||||||| |||| ||||||||| |
|
|
| T |
81426 |
aatagaacctctcaatcctcaattctcatcagcaatcggcaaatataaatagaaaaactgccacaaatttgttactttg |
81348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 24863748 - 24863824
Alignment:
| Q |
32 |
tcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatc--agttactttgagttatcagaa |
106 |
Q |
| |
|
||||||||| |||||||||||| || ||||||||||| |||||| |||||||| |||||||||||||||| |||| |
|
|
| T |
24863748 |
tcctcaattgtcattagcaattgacagatatagatagagaaactgtcataaatcaaagttactttgagttattagaa |
24863824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 13550382 - 13550421
Alignment:
| Q |
14 |
aacaatagaaccgctcattcctcaattctcattagcaatt |
53 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
13550382 |
aacaatagaacccctcaatcctcaattctcattagcaatt |
13550421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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