View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5034_high_12 (Length: 318)
Name: NF5034_high_12
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 1384605 - 1384894
Alignment:
| Q |
11 |
cacagatcaatgaacccaattacctcatctaatgtctcaggtttatcagaataaaatatcattaaaatcttccatgctacattatggaagagagttatct |
110 |
Q |
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| T |
1384605 |
cacagatcaatgaacccaattacctcatctaatgtctccggtttatcagaataaaatatcattaaaatcttccatgctacattatggaagagagttatct |
1384704 |
T |
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| Q |
111 |
tgtgctaaagtatggagtaagcttcatgaatcccagcgcgtttcacctcgtgggtaaccgtaaaagctagtgaatcgccaagccggaaaatgttgattcc |
210 |
Q |
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| T |
1384705 |
tgtgctaaagtatggagtaagcttcatgaatcgcagcgcgtttcacctcgtgggtaaccgtaaaagctagtgaatcgccaagccggaaaatgttgattcc |
1384804 |
T |
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| Q |
211 |
taatctctatgttgatgaaattagttgagtaatttatgagatgaccttcaaaacgtaaccactaaaaatacgctagtccatcgctcttcc |
300 |
Q |
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| T |
1384805 |
taatctctatgttgatgaaattagttgagtaatttatgagatgaccttcaaaacgtaaccactaaaaatacgttagtccaccgctcttcc |
1384894 |
T |
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