View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5034_high_18 (Length: 248)
Name: NF5034_high_18
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 5656127 - 5656348
Alignment:
| Q |
19 |
atttgatccttgacaaacttcccagtttatttcagcctcattttctcttccaaattcatcactacctccacatgatcctaatagtgttgatgaagttgan |
118 |
Q |
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| T |
5656127 |
atttgatccttgacaaacttcccagtttatttcagcctcattttctcttccaaattcatcactacctccacatgatcctaatagtgttgatgaagttgat |
5656226 |
T |
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| Q |
119 |
nnnnnngatgaaatattgctcatgtagctagtgaaagcaaatcttgaccatccattttctatagcatcagaagctaggtatggatgatcattccaactga |
218 |
Q |
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| T |
5656227 |
ttttttgatgaaatattactcatgtagctagtgaaagcaaatcttgaccatccattttctatagcatcagaagctagatatggatgatcattccagttga |
5656326 |
T |
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| Q |
219 |
acaaatcttttcttcctttgct |
240 |
Q |
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| T |
5656327 |
acaaatcttttcttcctttgct |
5656348 |
T |
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Back To:
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 47047714 - 47047669
Alignment:
| Q |
143 |
tagctagtgaaagcaaatcttgaccatccattttctatagcatcag |
188 |
Q |
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| T |
47047714 |
tagctagtgaaagcaaatcttgaccatccattttcaacagcatcag |
47047669 |
T |
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