View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5034_high_5 (Length: 494)
Name: NF5034_high_5
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 47806597 - 47807066
Alignment:
| Q |
1 |
gaaaaacaaaatgactccaatggaaatgaagattattcaggtatgcataagccaaacaaacggaagcggtatagttcagggcaattcgttggatgggcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
47806597 |
gaaaaacaaaatgactccaatggaaatgaaggttattcaggtatgcataagccgaacaaacggaagcgctatagttcaggggaattcgttggatgggcat |
47806696 |
T |
|
| Q |
101 |
caggacctctctctagtttcctggcatccatagggagatatgaaaccgaaccaatgatgcgaagggatgtaaaatctctcatgtttgaatacattacaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47806697 |
caggacctctctctagtttcctggcatccatagggagatatgaaaccgaaccaatgatgcgaagggatgtaaaatctctcatgtttgaatacattacaga |
47806796 |
T |
|
| Q |
201 |
gaaaaatctttatcatcataaagacaagaaaaaattcttccctgacgataagttgtttccaatctttaaaaagaaagtcatgtcaaagtacaagatatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47806797 |
gaaaaatctttatcatcataaagacaagaaaaaattcttccctgacgataagttgtttccaatctttaaaaagaaagtcatgtcaaagtacaagatatat |
47806896 |
T |
|
| Q |
301 |
cccctactcaagtttcatattgcggaaagatctgttgattcggctggaaaggaaaatcacgaccaaaacaaaaattgttcgacagacaataagcatattg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
47806897 |
cccctactcaagtttcatattgcggaaagatctgttgattcggctggaaaggaaaatcacgaccaaaacaaaaattgttcgacagacaacaagcatatcg |
47806996 |
T |
|
| Q |
401 |
atgatgaaacatgtatggaaagaagattgtcaagcttaatagaaaaacctctgttgaaaaaaggtgatacgtgtat |
476 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47806997 |
atgatgaaacatgt------agaagattgtcaagcttaatagaaaaacctctgttgaaaaaaggtgatacgtgtat |
47807066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 27 - 389
Target Start/End: Original strand, 47804079 - 47804441
Alignment:
| Q |
27 |
tgaagattattcaggtatgcataagccaaacaaacggaagcggtatagttcagggcaattcgttggatgggcatcaggacctctctctagtttcctggca |
126 |
Q |
| |
|
|||||| ||| ||||| ||||||||| || |||| ||| |||||||||||| | |||| || |||||||||||| ||||||| ||||| ||||| ||| |
|
|
| T |
47804079 |
tgaagaatatacaggtgtgcataagctgaagaaacagaatcggtatagttcaatggaatttgtcggatgggcatcaagacctctatctagcttccttgca |
47804178 |
T |
|
| Q |
127 |
tccatagggagatatgaaaccgaaccaatgatgcgaagggatgtaaaatctctcatgtttgaatacattacagagaaaaatctttatcatcataaagaca |
226 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | ||| ||| ||||||||| | ||||||||||| |||||||||||||| |||| ||||||| |
|
|
| T |
47804179 |
tccatagggagatacaaaaccgaaccaatgatgcaatggggaataagatctctcatatatgaatacattaaggagaaaaatctttaccatcccaaagaca |
47804278 |
T |
|
| Q |
227 |
agaaaaaattcttccctgacgataagttgtttccaatctttaaaaagaaagtcatgtcaaagtacaagatatatcccctactcaagtttcatattgcgga |
326 |
Q |
| |
|
||| |||||| ||||||| || ||||||||||| || ||||||||||||| ||| |||| |||||||| | |||||| ||||||| |||||| | |
|
|
| T |
47804279 |
agaggaaattcctccctgatgacaagttgtttcctatatttaaaaagaaagctgtgttgaagtctcagatatattctctactcgagtttcacattgcgaa |
47804378 |
T |
|
| Q |
327 |
aagatctgttgattcggctggaaaggaaaatcacgaccaaaacaaaaattgttcgacagacaa |
389 |
Q |
| |
|
|| || | |||||| || |||||||||||||||| |||| |||||||||||| ||||||| |
|
|
| T |
47804379 |
aaattcagatgattcatctagaaaggaaaatcacgatgaaaaaaaaaattgttcggcagacaa |
47804441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University