View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5034_low_1 (Length: 638)
Name: NF5034_low_1
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 585; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 1 - 617
Target Start/End: Original strand, 45944990 - 45945606
Alignment:
| Q |
1 |
ctagttataagtacataagagaatttggttggaatgaaactttggccaggagttcatacgagtgggttgaaaagaaggttgtttttgagccttcaatgct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45944990 |
ctagttataagtacataagagaatttggttggaatgaaactttggccaggagttcatacgagtgggttgaaaagaaggttgtttttgagccttcaatgct |
45945089 |
T |
|
| Q |
101 |
tcaatggcaatcagcagttagggacggtttacttgaagcagggattttgccttacaacggttttacatttgatcatgtatatgggactaaggttggaggg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45945090 |
tcaatggcaatcagcagttagggacggtttacttgaagcagggattttgccttacaacggttttacatttgatcatgtatatgggactaaggttggaggg |
45945189 |
T |
|
| Q |
201 |
acaacttttgataaggaaggttataaacacactgcagctgatttgttagagtatgccgatccaaagagaatttctgtttatttgcatgccacagttcaaa |
300 |
Q |
| |
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|||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45945190 |
acaattttcgataaggaaggtcataaacacactgcagctgatttgttagagtatgccgatccaaagagaatttctgtttatttgcatgccacagttcaaa |
45945289 |
T |
|
| Q |
301 |
agatactattcaagtggaatgcaggtatgtaatgtatctaagaatacatatgcctcattgttagctacttagctttttacatcggatccaacactattgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45945290 |
agatactattcaagtggaatgcaggtatgtaatgtatctaagaatacatacgcctcattgttagctacttagctttttacatcggatccaacactattgg |
45945389 |
T |
|
| Q |
401 |
tcttggtgtgtaactcaatgaatagactccgataccatataggaaatagatgaaattaattatgacaagtagcaaaatttaatagttttattagtttctt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45945390 |
tcttggtgtgtaactcaatgaatagactccgataccatataggaaatagatgaaattaattatgacaagtagcaaaatttaatagttttattagtttctt |
45945489 |
T |
|
| Q |
501 |
tacacagccttaagctaacagttaaaaaggaacgaatgtttgcaacaaaaacaaaagacggaatggaggtattgatgtttttgaacattttattttgtac |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
45945490 |
tacacagccttaagctaacagttaaaaaggaacgaatgtttgcaacaaaaaaaagagacggaatggaggtattgatgtttttgaactttttattttgtac |
45945589 |
T |
|
| Q |
601 |
agaaaaaaggaggccac |
617 |
Q |
| |
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||||||| ||||||||| |
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| T |
45945590 |
agaaaaagggaggccac |
45945606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 12 - 315
Target Start/End: Original strand, 45938237 - 45938540
Alignment:
| Q |
12 |
tacataagagaatttggttggaatgaaactttggccaggagttcatacgagtgggttgaaaagaaggttgtttttgagccttcaatgcttcaatggcaat |
111 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| | || |||||| || ||| ||||||||||||||| |||||||||| |||| | |||||| ||| |
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|
| T |
45938237 |
tacataagagattctggttggaatgaaactttggctaagatttcatatgaatggattgaaaagaaggttgcttttgagcctcaaatgatgcaatggtaat |
45938336 |
T |
|
| Q |
112 |
cagcagttagggacggtttacttgaagcagggattttgccttacaacggttttacatttgatcatgtatatgggactaaggttggagggacaacttttga |
211 |
Q |
| |
|
||||||| ||||| ||||||| |||||||||| |||| |||||||| |||||| | |||||||| | ||||||||||||||||| ||||||| |||||| |
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|
| T |
45938337 |
cagcagtgagggatggtttacctgaagcaggggttttaccttacaatggttttgcttttgatcacttgtatgggactaaggttggtgggacaatttttga |
45938436 |
T |
|
| Q |
212 |
taaggaaggttataaacacactgcagctgatttgttagagtatgccgatccaaagagaatttctgtttatttgcatgccacagttcaaaagatactattc |
311 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
45938437 |
taaggaaggttatagacacactgcagctgatttgttagagtatgctgatccaaagaaaatttcggtttatttgcatgcgacagttcaaaagatactattc |
45938536 |
T |
|
| Q |
312 |
aagt |
315 |
Q |
| |
|
|||| |
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|
| T |
45938537 |
aagt |
45938540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 242
Target Start/End: Original strand, 3091863 - 3092022
Alignment:
| Q |
83 |
ttttgagccttcaatgcttcaatggcaatcagcagttagggacggtttacttgaagcagggattttgccttacaacggttttacatttgatcatgtatat |
182 |
Q |
| |
|
|||| ||||| | |||| ||||||||||||||||||||| || || ||| | |||| ||| | ||||||||||| || ||||| | ||||||| | || |
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| T |
3091863 |
ttttcagcctcctatgcgtcaatggcaatcagcagttagagatggattattggaagtaggtgtgttgccttacaatggctttacttatgatcatattcat |
3091962 |
T |
|
| Q |
183 |
gggactaaggttggagggacaacttttgataaggaaggttataaacacactgcagctgat |
242 |
Q |
| |
|
||||||||||||||||| |||| ||||| | | ||| ||| |||||||||||||||| |
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|
| T |
3091963 |
gggactaaggttggaggtacaatctttgaccataatggtcatagacacactgcagctgat |
3092022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 3083436 - 3083544
Alignment:
| Q |
96 |
atgcttcaatggcaatcagcagttagggacggtttacttgaagcagggattttgccttacaacggttttacatttgatcatgtatatgggactaaggttg |
195 |
Q |
| |
|
|||| ||||||||||||||||||||| || || ||| | |||| ||| | ||||||||||| || ||||| | |||||| | ||||||||||||||| |
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|
| T |
3083436 |
atgcgtcaatggcaatcagcagttagagatggattattggaagtaggtgtgttgccttacaatggctttacttatgatcacattcatgggactaaggttg |
3083535 |
T |
|
| Q |
196 |
gagggacaa |
204 |
Q |
| |
|
|||| |||| |
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|
| T |
3083536 |
gaggtacaa |
3083544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 528
Target Start/End: Original strand, 41964101 - 41964185
Alignment:
| Q |
443 |
gaaatagatgaaattaattatgacaagtagcaaaatttaatagttttattagtttctttacacagccttaagctaacagttaaaaa |
528 |
Q |
| |
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||||||||||||||| |||||| || || ||||||||||||| |||||| |||| | || |||| ||||| ||||||||||||| |
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| T |
41964101 |
gaaatagatgaaattgtttatgaaaa-tatcaaaatttaatagatttattggtttgtgtaaacagtcttaaagtaacagttaaaaa |
41964185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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