View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5034_low_10 (Length: 327)
Name: NF5034_low_10
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 41475031 - 41475337
Alignment:
| Q |
19 |
atccttagtgaagaagtacccaggtgaggtcacgtttatttcctccgcgttgcgcagaatttctcgtttacctgtaaaactcaacaacaaa-----tcct |
113 |
Q |
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| T |
41475031 |
atccttagtgaagaagtacccaggtgagttcacgtttatttcctctgcgttgcgcagaatttctcgtttacctgtaaaactcaacaacaaatcaaatcct |
41475130 |
T |
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| Q |
114 |
tcaccaaattcaaaaaccctcttttttctaattcatcacgcaaacgacaccgtttcatcattttctagtgtcagtttttatttattacctaaaccagaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41475131 |
tcaccaaattcaaaaaccctcttttttctaattcatcacgcaaacgacaccgtttcatcattttctagtgtcagtttttatttattacctaaaccagaaa |
41475230 |
T |
|
| Q |
214 |
attttcttttcacacattcataaatcattttcatttccatttcgagaaaattttgttagggtttcgttttcttcatcttctcacacattctctcgttttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41475231 |
attttcttttcacacattcataaatcattttcatttccatttcgagaaaattttgttagggtttcgttttcttcatcttctcacacattctctcgttttt |
41475330 |
T |
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| Q |
314 |
tcttctc |
320 |
Q |
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||||||| |
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| T |
41475331 |
tcttctc |
41475337 |
T |
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