View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5034_low_13 (Length: 316)
Name: NF5034_low_13
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 95 - 294
Target Start/End: Original strand, 9701281 - 9701480
Alignment:
| Q |
95 |
caactagcagtcacgatggaggtgtagatcatcttaatcaaaaattaggtgtttcttgcaactcttactcacggttatcttagttatcctgctacttccc |
194 |
Q |
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| T |
9701281 |
caactagcagtcacaatggaggtgtagatcatcttaataaaaaatgatgtgtttcttgcaactcttactcacggttatcttagttatcctgctacttcgc |
9701380 |
T |
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| Q |
195 |
aagaagaacaacctctaacacgcaacgagaaagctctcaacatcaatgagccactttattttattatgactgttgatggtttatgagactatgtatcgat |
294 |
Q |
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| T |
9701381 |
aagaagaacaacctctaacatgcaacgagaaagctctcaacatcaatgagccactttattttattatgactgttgatgatttatgagactatgtatcgat |
9701480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 9701112 - 9701192
Alignment:
| Q |
18 |
ttaagttgctcaatatattttcaattcaaagtaatggttttaaaatcagaaataactttgttacaaaaaatttattgcaac |
98 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9701112 |
ttaacttgctcaatatattttcaattcaaagtaatggttttaaaatcagaaataactttgttacaaaaaatttatttcaac |
9701192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 95 - 294
Target Start/End: Original strand, 13567520 - 13567719
Alignment:
| Q |
95 |
caactagcagtcacgatggaggtgtagatcatcttaatcaaaaattaggtgtttcttgcaactcttactcacggttatcttagttatcctgctacttccc |
194 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13567520 |
caactagcagtcacaatggaggtgtagatcatcttaataaaaaatgatgtgtttcttgcaactcttactcacggttatcttagttatcctgctacttcgc |
13567619 |
T |
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| Q |
195 |
aagaagaacaacctctaacacgcaacgagaaagctctcaacatcaatgagccactttattttattatgactgttgatggtttatgagactatgtatcgat |
294 |
Q |
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| T |
13567620 |
aagaagaacaacctctaacatgcaacgagaaagctctcaacatcaatgagccactttattttattatgactgttgatgatttatgagactatgtatcgat |
13567719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 13567351 - 13567431
Alignment:
| Q |
18 |
ttaagttgctcaatatattttcaattcaaagtaatggttttaaaatcagaaataactttgttacaaaaaatttattgcaac |
98 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13567351 |
ttaacttgctcaatatattttcaattcaaagtaatggttttaaaatcagaaataactttgttacaaaaaatttatttcaac |
13567431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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