View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5034_low_16 (Length: 253)
Name: NF5034_low_16
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 16387970 - 16387723
Alignment:
| Q |
1 |
tgttttttctgagaaggagaaccactacgttcaagaatttcgaggtcgacaagactgagagacatgagaccaagtgtgagaccggacatgacaccggcaa |
100 |
Q |
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| T |
16387970 |
tgttttttctgagaaggagaaccactacgttcaagaatttcgaggtctacaagactgagagacatgagaccaagtgtgagaccggacatgactccggcaa |
16387871 |
T |
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| Q |
101 |
agagaacaagaaaacagcatattccggcgtaagcaatccatgttgcagaaccaaaaggtatgccttcgtttgcgagaggaaggtagtcactactaatagt |
200 |
Q |
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| T |
16387870 |
agagaacaagaaaacagcatattccggcgtaagcaatccatgttgcagaaccaaaaggtatgccttcgttggcgagagcaaggtagtcactactaatagt |
16387771 |
T |
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| Q |
201 |
caacgctttaaaaatggttccatacgtcatacgtgtatctctgctcct |
248 |
Q |
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| T |
16387770 |
caacgctttaaaaatggttccatacgtcatacgtgtatgtctgttcct |
16387723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 48667453 - 48667276
Alignment:
| Q |
1 |
tgttttttctgagaaggagaaccactacgttcaagaatttcgaggtcgacaagactgagagacatgagaccaagtgtgagaccggacatgacaccggcaa |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||| |
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| T |
48667453 |
tgttttttctcagaaggagaaccactacgttcaagaatttcaaggtcgacgagactgagagacatgagaccaagagtgagaccggacatgataccagcaa |
48667354 |
T |
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| Q |
101 |
agagaacaagaaaacagcatattccggcgtaagcaatccatgttgcagaaccaaaaggtatgccttcgtttgcgagag |
178 |
Q |
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| T |
48667353 |
agcatacgagaaaacaacagatgccgacataagcgatccatgttacggatccaaaaggtatgccttcattggcgagag |
48667276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 169
Target Start/End: Complemental strand, 2792653 - 2792543
Alignment:
| Q |
59 |
gagacatgagaccaagtgtgagaccggacatgacaccggcaaagagaacaagaaaacagcatattccggcgtaagcaatccatgttgcagaaccaaaagg |
158 |
Q |
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|||||| || ||||| |||||||||||||||| |||| ||| ||||||| ||||||||| | | |||||||| ||||||||||| || |||||||| |
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| T |
2792653 |
gagacaagaaaccaatggtgagaccggacatgagtccggaaaatagaacaataaaacagcagaagacagcgtaagcgatccatgttgccgacccaaaagg |
2792554 |
T |
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| Q |
159 |
tatgccttcgt |
169 |
Q |
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| T |
2792553 |
tatgctttcgt |
2792543 |
T |
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