View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5034_low_17 (Length: 249)
Name: NF5034_low_17
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034_low_17 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 42 - 249
Target Start/End: Original strand, 45791868 - 45792092
Alignment:
| Q |
42 |
gcctaagttagtatcagagcctattcatgatccatcaggtcattcactatcagctatcggatcacttgagtcacactccaaatgtccaattccaatcgtg |
141 |
Q |
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| T |
45791868 |
gcctaagttagtatcagagcctattcatgatccatcagatcattcactatcagctatcggatcatttgagtcacactccaaatgtccaattccaatcgtg |
45791967 |
T |
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| Q |
142 |
agggtgtgt-----------------gcttgagatgtggctttaatgtgtttataacttgaagcattattcactttacaaaccagtttgtagggtttgtt |
224 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45791968 |
agggtgtgtgttgacagtcccacatagtttgagatgtggctttaatgtgtttataacttgaagcattattcactttacaaaccagtttgtagggtttgtt |
45792067 |
T |
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| Q |
225 |
atggccaacccaaattctaaaaatt |
249 |
Q |
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| T |
45792068 |
atggccaacccaaattctaaaaatt |
45792092 |
T |
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