View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5034_low_2 (Length: 547)
Name: NF5034_low_2
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 10 - 411
Target Start/End: Complemental strand, 36256448 - 36256047
Alignment:
| Q |
10 |
attattctgtgctaccacagttactctaattttaattcttgatttccacataccacaaacaaaatctcagcaagactatctagacaactttcaactagat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36256448 |
attattctgtgctaccacagttactctaattttaattcttgatttccacataccacaaacaaaatctcagcaagactatctagacaactttcaactagat |
36256349 |
T |
|
| Q |
110 |
tgtgatgtcccctccaattatacatatggtaatatttgcaacagtacctcaccttcaaatcaaaccctcctcaatacaacactccaaccaccacagctta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36256348 |
tgtgatgtcccctccaattatacatatggtaatatttgcaacagtacctcacattcaaatcaaaccctcctcaatacaacactccaaccaccacagctta |
36256249 |
T |
|
| Q |
210 |
tcttatgtctcgaactccacattccctctcatagccaatgccaacattatctcagatggagaccctattccgactgacaccgtgatcactgtcccagtaa |
309 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36256248 |
tcttatctctcgaactccacagtccctctcatagccaatgccaacattatctcagatggagaccctattccgactgacaccgtgatcactgtcccagtaa |
36256149 |
T |
|
| Q |
310 |
actgtgtttgttcaggtcaccacttctagcacaattcctgatacatcttgaaaactgaggatgaaaactatacttcactcttgccaataacacctatgag |
409 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36256148 |
actatgtttgttcaggtcaccacttctagcacaattcctgatacatcttgaaaactgaggatgaaaactatacttcactcttgccaataacacctatgag |
36256049 |
T |
|
| Q |
410 |
gc |
411 |
Q |
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|| |
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| T |
36256048 |
gc |
36256047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 546
Target Start/End: Complemental strand, 36264225 - 36263679
Alignment:
| Q |
10 |
attattctgtgctaccacagttactctaattttaattcttgatttccacataccacaaacaaaatctcagcaagactatctagacaactttcaactagat |
109 |
Q |
| |
|
||||||| ||||||||| | |||||||||| ||| | ||| |||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
36264225 |
attattcagtgctaccatacttactctaatcttattgcttaatttccacatcccacaaacaaaatctcagcaagaatatctagacaaccatcaactagat |
36264126 |
T |
|
| Q |
110 |
tgtgatgtcccctccaattatacatatggtaatatttgcaacag-------------------tacctcaccttcaaatcaaaccctcctcaatacaaca |
190 |
Q |
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||||||| ||| ||||| | ||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| ||||||| |
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| T |
36264125 |
tgtgatgacccttccaaatctacatatggtaatatctgcaacagcatcaactcctgtcaatcttacctcaccttcaaatcaagccctcctcattacaaca |
36264026 |
T |
|
| Q |
191 |
ctccaaccaccacagcttatcttatgtctcgaactccacattccctctcatagccaatgccaacattatctcagatggagaccctattccgactgacacc |
290 |
Q |
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||||| |||||| ||||||||| || |||||| ||| ||||||| || ||||||||||||| |||||| ||| || ||||||||||| |||||| |
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| T |
36264025 |
ctccagccaccatagcttatct-----cttgaactcaacagtccctctaattgccaatgccaacaacatctcatatgttgatcctattccgacggacacc |
36263931 |
T |
|
| Q |
291 |
gtgatcactgtcccagtaaactgtgtttgttcaggtcaccacttctagcacaattcctgatacatcttgaaaactgaggatgaaaactatacttcactct |
390 |
Q |
| |
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|||| ||||| ||||| |||||| ||| || |||||| ||| | |||| ||||||| ||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
36263930 |
atgattactgtaccagttaactgttattgctccggtcactactaccagcataattcctcatacacattgaagactgaggatgaaaacta--cttcactct |
36263833 |
T |
|
| Q |
391 |
tgccaataacacctatgaggcactcacaacatgtcaggctattgatgctcagaatatatacggattcacaaacctcacttcaaggctcaatttgcatgtt |
490 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||| || |||||||| |||||||| |
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| T |
36263832 |
tgccaataacacctatgagtcactcacaacatgtcaggctcttgatgctcagaatatatatggactcacaaacctcactgcagggctcaatatgcatgtt |
36263733 |
T |
|
| Q |
491 |
ccactcagaggtgtgcttggtccatctccaagcaaatggaaaatggattcaagtat |
546 |
Q |
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|||||| ||||||||||| | | |||||||||||| |||||||||||||||||| |
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| T |
36263732 |
ccactc--aggtgtgcttgtcctacctccaagcaaattgaaaatggattcaagtat |
36263679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 468 - 547
Target Start/End: Complemental strand, 36256047 - 36255968
Alignment:
| Q |
468 |
cttcaaggctcaatttgcatgttccactcagaggtgtgcttggtccatctccaagcaaatggaaaatggattcaagtatc |
547 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36256047 |
cttcaaggctcaatttgcatgttccactcaggggtgtgcttggtccatctccaagcaaatggaaaatggattcaagtatc |
36255968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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