View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5034_low_21 (Length: 239)

Name: NF5034_low_21
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5034_low_21
NF5034_low_21
[»] chr7 (11 HSPs)
chr7 (1-239)||(9701534-9701772)
chr7 (93-176)||(868253-868336)
chr7 (93-176)||(1229530-1229613)
chr7 (129-220)||(11677185-11677274)
chr7 (93-215)||(15815817-15815939)
chr7 (93-214)||(20913911-20914032)
chr7 (1-52)||(5222283-5222334)
chr7 (1-52)||(43364178-43364229)
chr7 (153-214)||(15756518-15756580)
chr7 (130-176)||(26009210-26009256)
chr7 (93-174)||(26150614-26150695)
[»] chr4 (10 HSPs)
chr4 (1-239)||(13567773-13568011)
chr4 (93-176)||(11774177-11774260)
chr4 (92-176)||(13842391-13842475)
chr4 (138-214)||(31933236-31933310)
chr4 (93-143)||(1397902-1397953)
chr4 (153-220)||(9246985-9247051)
chr4 (1-52)||(40976836-40976887)
chr4 (3-53)||(667915-667965)
chr4 (133-216)||(17948624-17948707)
chr4 (133-216)||(17952476-17952559)
[»] chr2 (11 HSPs)
chr2 (94-176)||(34898823-34898905)
chr2 (92-176)||(30622030-30622114)
chr2 (92-176)||(30624651-30624735)
chr2 (92-176)||(30667783-30667867)
chr2 (95-168)||(24533911-24533984)
chr2 (90-215)||(28772209-28772334)
chr2 (157-220)||(19290363-19290427)
chr2 (92-176)||(30665355-30665444)
chr2 (153-217)||(34137939-34138002)
chr2 (4-39)||(22599911-22599946)
chr2 (130-212)||(24300869-24300951)
[»] scaffold0282 (1 HSPs)
scaffold0282 (93-176)||(21497-21580)
[»] chr1 (9 HSPs)
chr1 (93-239)||(23600804-23600949)
chr1 (93-190)||(30821232-30821328)
chr1 (93-176)||(21199873-21199956)
chr1 (1-53)||(19329303-19329355)
chr1 (93-168)||(20406043-20406119)
chr1 (125-180)||(18527303-18527358)
chr1 (3-52)||(9315891-9315940)
chr1 (1-52)||(21814748-21814799)
chr1 (4-39)||(8995656-8995692)
[»] scaffold0508 (1 HSPs)
scaffold0508 (93-216)||(5380-5503)
[»] chr8 (12 HSPs)
chr8 (138-216)||(21675360-21675438)
chr8 (1-53)||(9907148-9907200)
chr8 (92-174)||(23637696-23637777)
chr8 (1-39)||(44246148-44246186)
chr8 (93-174)||(24621962-24622043)
chr8 (4-39)||(2268595-2268630)
chr8 (99-220)||(25261198-25261315)
chr8 (1-39)||(5064239-5064277)
chr8 (4-39)||(22222071-22222107)
chr8 (4-39)||(22226902-22226938)
chr8 (4-39)||(22228413-22228449)
chr8 (4-39)||(22233244-22233280)
[»] chr5 (9 HSPs)
chr5 (93-221)||(26724686-26724815)
chr5 (1-53)||(42729059-42729111)
chr5 (1-52)||(9335389-9335440)
chr5 (1-52)||(3413533-3413584)
chr5 (1-52)||(4694454-4694505)
chr5 (1-52)||(12919193-12919244)
chr5 (92-163)||(22652736-22652807)
chr5 (153-230)||(24761515-24761593)
chr5 (153-230)||(25340359-25340434)
[»] scaffold0111 (1 HSPs)
scaffold0111 (93-220)||(35671-35796)
[»] chr3 (11 HSPs)
chr3 (93-166)||(21662397-21662470)
chr3 (153-230)||(19707319-19707395)
chr3 (3-52)||(20628595-20628644)
chr3 (4-52)||(4501048-4501096)
chr3 (4-52)||(4644568-4644616)
chr3 (153-216)||(38278764-38278826)
chr3 (125-175)||(10929181-10929231)
chr3 (1-54)||(27900455-27900508)
chr3 (8-52)||(4506374-4506418)
chr3 (138-220)||(12800892-12800971)
chr3 (92-176)||(16279747-16279830)
[»] scaffold0018 (1 HSPs)
scaffold0018 (93-176)||(49956-50040)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-52)||(202331-202382)
[»] chr6 (6 HSPs)
chr6 (1-52)||(13105134-13105185)
chr6 (153-214)||(1559795-1559857)
chr6 (1-54)||(1051148-1051202)
chr6 (146-230)||(23295505-23295587)
chr6 (92-230)||(6777310-6777447)
chr6 (4-52)||(18765618-18765666)
[»] scaffold0174 (1 HSPs)
scaffold0174 (93-174)||(24305-24386)
[»] scaffold0914 (1 HSPs)
scaffold0914 (93-169)||(655-731)
[»] scaffold0161 (1 HSPs)
scaffold0161 (138-222)||(4912-4995)
[»] scaffold0265 (1 HSPs)
scaffold0265 (1-52)||(18010-18061)
[»] scaffold0166 (1 HSPs)
scaffold0166 (153-230)||(4012-4090)
[»] scaffold0024 (2 HSPs)
scaffold0024 (128-182)||(64062-64116)
scaffold0024 (153-230)||(101298-101374)
[»] scaffold1121 (1 HSPs)
scaffold1121 (138-222)||(2316-2398)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 9701772 - 9701534
Alignment:
Q  1 accagtccctgtggagacgataacaaaaatacttactttgtatacaacatcattcagcttcatttataggcactggtttgagagacgttggatgtaacac 100  Q
    |||||||||||||||||  ||||||||||||||||||||  ||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  9701772 accagtccctgtggagataataacaaaaatacttacttttgatacagcatcattcagcttcatttataggcactgatttgaaagacgttggatgtaacac 9701673  T
Q  101 cctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatttcaaaaacatgcatgaataatttt 200  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9701672 cctaaactgtaaaaccgataacacacgcaaatgatataatcatataaagaacttagatg-tacttcttctataatttcaaaaacatgcatgaataatttt 9701574  T
Q  201 ttccaaacatcgcagcag-aaaatcatatcaacaattcat 239  Q
    ||| |||||||||||| | |||||||| ||||||||||||    
T  9701573 ttcaaaacatcgcagcggaaaaatcatctcaacaattcat 9701534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 868336 - 868253
Alignment:
Q  93 tgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatt 176  Q
    ||||| |||||||||||||||| |||| ||  |||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  868336 tgtaataccctaaactctaaaagcgataacttacgcaaatgatacaatcatataaagaatttagatgttacttcttcaataatt 868253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 1229613 - 1229530
Alignment:
Q  93 tgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatt 176  Q
    ||||| |||||||||||||||| |||| ||  |||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  1229613 tgtaataccctaaactctaaaagcgataacttacgcaaatgatacaatcatataaagaatttagatgttacttcttcaataatt 1229530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 220
Target Start/End: Original strand, 11677185 - 11677274
Alignment:
Q  129 aaatgatataatcatataaagaacttagatgttacttcttctataatttcaaaaacatgcatgaataattttttccaaacatcgcagcagaa 220  Q
    |||||||| |||||||||||||| ||||||||||||||||||| || ||| ||| ||||||| |||||||||||  |||||||||| |||||    
T  11677185 aaatgatacaatcatataaagaatttagatgttacttcttctacaagttc-aaatcatgcataaataatttttt-aaaacatcgcatcagaa 11677274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 15815939 - 15815817
Alignment:
Q  93 tgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatttcaaaaacatgcatga 192  Q
    ||||| |||||||||||||||| | || |   |||| || |||| |||||||||||||| ||||||||||||||||| |||| |    || ||||||| |    
T  15815939 tgtaataccctaaactctaaaagcaataaattacgctaaagatacaatcatataaagaatttagatgttacttcttcaataaatcaccaagcatgcataa 15815840  T
Q  193 ataattttttccaaacatcgcag 215  Q
    |||||||||| ||||||||||||    
T  15815839 ataatttttttcaaacatcgcag 15815817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 20914032 - 20913911
Alignment:
Q  93 tgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatttcaaaaacatgcatga 192  Q
    ||||||||||||||||||||||  ||| |   ||   |||||||||| ||||||||||| ||||||||||||||||| ||||||    || |||| || |    
T  20914032 tgtaacaccctaaactctaaaagtgataaattacagtaatgatataaccatataaagaatttagatgttacttcttcaataattcaccaagcatgtataa 20913933  T
Q  193 ataattttttccaaacatcgca 214  Q
    |||||||| |||||||||||||    
T  20913932 ataattttctccaaacatcgca 20913911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 5222334 - 5222283
Alignment:
Q  1 accagtccctgtggagacgataacaaaaatacttactttgtatacaacatca 52  Q
    |||||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  5222334 accagtccctgtggagacgataacaaaaatacttacttttgatactacatca 5222283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 43364229 - 43364178
Alignment:
Q  1 accagtccctgtggagacgataacaaaaatacttactttgtatacaacatca 52  Q
    ||||||||||||||||||||||||| |||||||||||||  |||| ||||||    
T  43364229 accagtccctgtggagacgataacataaatacttacttttgatactacatca 43364178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 15756580 - 15756518
Alignment:
Q  153 ttagatgttacttcttctataatttcaaaaacatgcatgaataattttt-tccaaacatcgca 214  Q
    ||||||| |||||||||||||||||| ||||||| ||| |||||||||| || ||||||||||    
T  15756580 ttagatgctacttcttctataatttccaaaacatacataaataatttttctcaaaacatcgca 15756518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 26009256 - 26009210
Alignment:
Q  130 aatgatataatcatataaagaacttagatgttacttcttctataatt 176  Q
    ||||||| |||||||||||||| ||||||||| ||||||| ||||||    
T  26009256 aatgatacaatcatataaagaatttagatgttgcttcttcaataatt 26009210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 26150695 - 26150614
Alignment:
Q  93 tgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataa 174  Q
    ||||||||| |||||| ||||| |||| |   |||| ||||||| || ||||||||||| ||| ||||||||||||| ||||    
T  26150695 tgtaacaccttaaactttaaaagcgataaattacgctaatgatacaaccatataaagaatttatatgttacttcttcaataa 26150614  T

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Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 13568011 - 13567773
Alignment:
Q  1 accagtccctgtggagacgataacaaaaatacttactttgtatacaacatcattcagcttcatttataggcactggtttgagagacgttggatgtaacac 100  Q
    |||||||||||||||||  ||||||||||||||||||||  ||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  13568011 accagtccctgtggagataataacaaaaatacttacttttgatacagcatcattcagcttcatttataggcactgatttgaaagacgttggatgtaacac 13567912  T
Q  101 cctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatttcaaaaacatgcatgaataatttt 200  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13567911 cctaaactgtaaaaccgataacacacgcaaatgatataatcatataaagaacttagatg-tacttcttctataatttcaaaaacatgcatgaataatttt 13567813  T
Q  201 ttccaaacatcgcagcag-aaaatcatatcaacaattcat 239  Q
    ||| |||||||||||| | |||||||| ||||||||||||    
T  13567812 ttcaaaacatcgcagcggaaaaatcatctcaacaattcat 13567773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 11774177 - 11774260
Alignment:
Q  93 tgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatt 176  Q
    |||||||||||||||||||||| |||| |   |||| ||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  11774177 tgtaacaccctaaactctaaaagcgataaattacgccaatgatacaatcatataaagaatttagatgttacttcttcaataatt 11774260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 13842475 - 13842391
Alignment:
Q  92 atgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatt 176  Q
    ||||||||||||||||||||||| |||| |   |||| | ||||| |||||||||| ||| ||||||||||||||||| ||||||    
T  13842475 atgtaacaccctaaactctaaaaacgataaattacgctattgatacaatcatataaggaatttagatgttacttcttcaataatt 13842391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 31933236 - 31933310
Alignment:
Q  138 aatcatataaagaacttagatgttacttcttctataatttcaaaaacatgcatgaataattttttccaaacatcgca 214  Q
    ||||||| |||| | ||||||||||||||||||||||  || ||||||||||| ||||| |||||| ||||||||||    
T  31933236 aatcatacaaaggatttagatgttacttcttctataa-gtccaaaacatgcataaataa-tttttcaaaacatcgca 31933310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 1397953 - 1397902
Alignment:
Q  93 tgtaacaccctaaactctaaaa-ccgattacacacgcaaatgatataatcat 143  Q
    ||||||||||||||||||||||  |||| |||||||||||||||| ||||||    
T  1397953 tgtaacaccctaaactctaaaaggcgataacacacgcaaatgatacaatcat 1397902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 9246985 - 9247051
Alignment:
Q  153 ttagatgttacttcttctataatttcaaaaacatgcatgaataattttttccaaacatcgcagcagaa 220  Q
    ||||||| |||||||||||||| |||  |||||||||| ||| | |||||| ||||||||||||||||    
T  9246985 ttagatgctacttcttctataagttcctaaacatgcat-aattaatttttcaaaacatcgcagcagaa 9247051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40976836 - 40976887
Alignment:
Q  1 accagtccctgtggagacgataacaaaaatacttactttgtatacaacatca 52  Q
    ||||||||||||||||| ||||||| |||||||||||||  |||| ||||||    
T  40976836 accagtccctgtggagaagataacataaatacttacttttgatactacatca 40976887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 667915 - 667965
Alignment:
Q  3 cagtccctgtggagacgataacaaaaatacttactttgtatacaacatcat 53  Q
    |||||||| ||||||| ||||||||||||||||||||  |||| |||||||    
T  667915 cagtccctatggagacaataacaaaaatacttacttttgatactacatcat 667965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 17948707 - 17948624
Alignment:
Q  133 gatataatcatataaagaacttagatgttacttcttctataatttcaaaaacatgcatgaataattttt-tccaaacatcgcagc 216  Q
    |||| ||| |||| ||||| ||||||| ||||||||||| || ||| || |||||||| |||||||||| || ||||||||||||    
T  17948707 gatacaattatattaagaatttagatgctacttcttctaaaagttc-aacacatgcataaataatttttctcaaaacatcgcagc 17948624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 17952559 - 17952476
Alignment:
Q  133 gatataatcatataaagaacttagatgttacttcttctataatttcaaaaacatgcatgaataattttt-tccaaacatcgcagc 216  Q
    |||| ||| |||| ||||| ||||||| ||||||||||| || ||| || |||||||| |||||||||| || ||||||||||||    
T  17952559 gatacaattatattaagaatttagatgctacttcttctaaaagttc-aacacatgcataaataatttttctcaaaacatcgcagc 17952476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 34898905 - 34898823
Alignment:
Q  94 gtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatt 176  Q
    ||||||||||||||||||||| ||||  ||||||||||||||| |||||||||||||| |||||| |||||||||| ||||||    
T  34898905 gtaacaccctaaactctaaaagcgataccacacgcaaatgatacaatcatataaagaatttagattttacttcttccataatt 34898823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 30622114 - 30622030
Alignment:
Q  92 atgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatt 176  Q
    |||||||| |||||||||| ||| |||| |   |||| ||||||| |||| ||||||||| ||||||||||||||||| ||||||    
T  30622114 atgtaacaacctaaactctgaaagcgataaattacgctaatgatacaatcgtataaagaatttagatgttacttcttcaataatt 30622030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 30624735 - 30624651
Alignment:
Q  92 atgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatt 176  Q
    |||||||| |||||||||| ||| |||| |   |||| ||||||| |||| ||||||||| ||||||||||||||||| ||||||    
T  30624735 atgtaacaacctaaactctgaaagcgataaattacgctaatgatacaatcgtataaagaatttagatgttacttcttcaataatt 30624651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 30667867 - 30667783
Alignment:
Q  92 atgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatt 176  Q
    ||||||||||||||||| ||||| |||| |   |||| ||||||| |||| ||||||||| || |||||||||||||| ||||||    
T  30667867 atgtaacaccctaaactttaaaagcgataaattacgctaatgatacaatcgtataaagaatttcgatgttacttcttcaataatt 30667783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 24533984 - 24533911
Alignment:
Q  95 taacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttctt 168  Q
    |||||| ||||||||||||| |||| |   |||| ||||| | |||||||||||||| ||||||||||||||||    
T  24533984 taacacactaaactctaaaaacgataaattacgctaatgacaaaatcatataaagaatttagatgttacttctt 24533911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 215
Target Start/End: Original strand, 28772209 - 28772334
Alignment:
Q  90 ggatgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatttcaaaaacatgca 189  Q
    |||||||||| |||||| ||||||| | || |   |||| ||||||| |||||||||||||| ||||||| ||||||  |  |||||    |||||||||    
T  28772209 ggatgtaacatcctaaagtctaaaagcaataaattacgctaatgatacaatcatataaagaatttagatgctacttcgccagtaattcaccaaacatgca 28772308  T
Q  190 tgaataattttttccaaacatcgcag 215  Q
    | ||||||||| || |||||||||||    
T  28772309 taaataattttctcaaaacatcgcag 28772334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 19290363 - 19290427
Alignment:
Q  157 atgttacttcttctataatttcaaaaacatgcatgaataattttt-tccaaacatcgcagcagaa 220  Q
    ||||||||||||| |||||||  ||||||||||| |||||||||| || ||||||||||| ||||    
T  19290363 atgttacttcttccataattttcaaaacatgcataaataatttttctcaaaacatcgcagtagaa 19290427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 30665444 - 30665355
Alignment:
Q  92 atgtaacaccctaaactctaaaaccgattac--ac---acgcaaatgatataatcatataaagaacttagatgttacttcttctataatt 176  Q
    ||||||||||||||||||||||  ||||||   ||   |||| ||||||| |||| ||||||||| ||||||||||||||||| ||||||    
T  30665444 atgtaacaccctaaactctaaatgcgattaattacgctacgctaatgatacaatcgtataaagaatttagatgttacttcttcaataatt 30665355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 34138002 - 34137939
Alignment:
Q  153 ttagatgttacttcttctataatttcaaaaacatgcatgaataattttttccaaacatcgcagca 217  Q
    |||||||||||||||||||||| ||  ||||||||||| |||||  ||||| |||||||||||||    
T  34138002 ttagatgttacttcttctataagttttaaaacatgcataaataa-attttcaaaacatcgcagca 34137939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 22599946 - 22599911
Alignment:
Q  4 agtccctgtggagacgataacaaaaatacttacttt 39  Q
    ||||| ||||||||||||||||||||||||||||||    
T  22599946 agtccttgtggagacgataacaaaaatacttacttt 22599911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 24300869 - 24300951
Alignment:
Q  130 aatgatataatcatataaagaacttagatgttacttcttctataatttcaaaaac-atgcatgaataattttttccaaacatcg 212  Q
    ||||||| ||||||||| | || ||||||||||||||||| |||| ||||  ||| |||||| ||||||| |||||||||||||    
T  24300869 aatgatacaatcatatacaaaatttagatgttacttcttcaataa-ttcatcaacaatgcataaataattctttccaaacatcg 24300951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 21580 - 21497
Alignment:
Q  93 tgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatt 176  Q
    |||||| ||||||| |||||||  ||| |||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  21580 tgtaactccctaaattctaaaagtgataacacacgcaaatgatacaatcatataaagaatttagatgttacttcttcaataatt 21497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 239
Target Start/End: Original strand, 23600804 - 23600949
Alignment:
Q  93 tgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatttcaaaaacatgcatga 192  Q
    |||||||||||||||||||||| |||  ||||||  |||||||| |||||||||||||| ||||||||||||||||| ||||  ||  |||||||||| |    
T  23600804 tgtaacaccctaaactctaaaagcgacaacacacataaatgatacaatcatataaagaatttagatgttacttcttcaataa-atcctaaacatgcat-a 23600901  T
Q  193 ataattttttccaaacatcgcagcagaa-aatcatatcaacaattcat 239  Q
     ||| |||||   ||||||| ||||||| |||||| ||||||||||||    
T  23600902 ctaaatttttaagaacatcgtagcagaataatcatttcaacaattcat 23600949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 30821232 - 30821328
Alignment:
Q  93 tgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatttcaaaaacatgcat 190  Q
    ||||||| | ||| |||||||| | || | |||||||||||||| |||||| ||||||| ||||||||||||||||| ||||  ||||||||||||||    
T  30821232 tgtaacaacataatctctaaaagcaataaaacacgcaaatgatacaatcatgtaaagaatttagatgttacttcttccataa-atcaaaaacatgcat 30821328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 21199956 - 21199873
Alignment:
Q  93 tgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatt 176  Q
    |||||||||||||||||||||| |||| |   | || ||||||| ||||| |||||||| ||||||||||||||||| ||||||    
T  21199956 tgtaacaccctaaactctaaaagcgataaattatgctaatgatacaatcacataaagaatttagatgttacttcttcaataatt 21199873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 19329355 - 19329303
Alignment:
Q  1 accagtccctgtggagacgataacaaaaatacttactttgtatacaacatcat 53  Q
    |||||||||||||||||||||| ||||||||||||||||  |||| |||||||    
T  19329355 accagtccctgtggagacgatagcaaaaatacttacttttgatactacatcat 19329303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 20406043 - 20406119
Alignment:
Q  93 tgtaacaccctaaactctaaaaccgattacac-acgcaaatgatataatcatataaagaacttagatgttacttctt 168  Q
    |||||||||||||||||||||| |||| | |  |||||||||||| |||||||| ||||| ||||||||| ||||||    
T  20406043 tgtaacaccctaaactctaaaagcgataaaattacgcaaatgatacaatcatatcaagaatttagatgtttcttctt 20406119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 18527303 - 18527358
Alignment:
Q  125 acgcaaatgatataatcatataaagaacttagatgttacttcttctataatttcaa 180  Q
    |||||||||||| ||||||||||| || ||||||||||||| |||||||| |||||    
T  18527303 acgcaaatgatacaatcatataaaaaatttagatgttacttattctataagttcaa 18527358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 9315940 - 9315891
Alignment:
Q  3 cagtccctgtggagacgataacaaaaatacttactttgtatacaacatca 52  Q
    ||||||||||||||||||||||| |||||||||||||  |||| ||||||    
T  9315940 cagtccctgtggagacgataacataaatacttacttttgatactacatca 9315891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 21814799 - 21814748
Alignment:
Q  1 accagtccctgtggagacgataacaaaaatacttactttgtatacaacatca 52  Q
    |||||||||||||||||||||||| |||| |||||||||  |||| ||||||    
T  21814799 accagtccctgtggagacgataactaaaaaacttacttttgatactacatca 21814748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 8995692 - 8995656
Alignment:
Q  4 agtccctgtggagacgata-acaaaaatacttacttt 39  Q
    ||||||||||||||||||| |||||||||||||||||    
T  8995692 agtccctgtggagacgatacacaaaaatacttacttt 8995656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 216
Target Start/End: Original strand, 5380 - 5503
Alignment:
Q  93 tgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatttcaaaaacatgcatga 192  Q
    ||||||||||| ||||||||||  ||| |  ||||| |||||||||||||||||||||| ||||||||||||||||| |||| |    || ||||||| |    
T  5380 tgtaacaccctgaactctaaaagtgataaatcacgctaatgatataatcatataaagaatttagatgttacttcttcaataaatcaccaagcatgcataa 5479  T
Q  193 ataattttttccaaacatcgcagc 216  Q
    |||||||| || ||||||| ||||    
T  5480 ataattttctcaaaacatcacagc 5503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 21675360 - 21675438
Alignment:
Q  138 aatcatataaagaacttagatgttacttcttctataatttcaaaaacatgcatgaataattttttccaaacatcgcagc 216  Q
    ||||||| |||||| ||||||| |||||||||||||| ||| ||||||||||| ||||||||| || |||| |||||||    
T  21675360 aatcatacaaagaatttagatgctacttcttctataagttccaaaacatgcataaataattttctcaaaacttcgcagc 21675438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 9907148 - 9907200
Alignment:
Q  1 accagtccctgtggagacgataacaaaaatacttactttgtatacaacatcat 53  Q
    |||||||| ||||||||||||||||||||||||||||||  ||||||||||||    
T  9907148 accagtccatgtggagacgataacaaaaatacttacttttgatacaacatcat 9907200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 23637696 - 23637777
Alignment:
Q  92 atgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataa 174  Q
    ||||||||||||||||||||||| |||| |  ||||| ||||||| || ||||| |||||  |||||||||||||||| ||||    
T  23637696 atgtaacaccctaaactctaaaagcgataaatcacgctaatgatacaa-catatcaagaatctagatgttacttcttcaataa 23637777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 44246148 - 44246186
Alignment:
Q  1 accagtccctgtggagacgataacaaaaatacttacttt 39  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  44246148 accagtccctgtggagacgataacataaatacttacttt 44246186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 24621962 - 24622043
Alignment:
Q  93 tgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataa 174  Q
    ||||||||||||||||||||||  ||| |   |||| ||||||| |||||||| |||||  |||||||||||||||| ||||    
T  24621962 tgtaacaccctaaactctaaaagtgataaattacgctaatgatacaatcatatcaagaatctagatgttacttcttcaataa 24622043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 2268595 - 2268630
Alignment:
Q  4 agtccctgtggagacgataacaaaaatacttacttt 39  Q
    ||||||| ||||||||||||||||||||||||||||    
T  2268595 agtccctatggagacgataacaaaaatacttacttt 2268630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 25261198 - 25261315
Alignment:
Q  99 accctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatttcaaaaacatgcatgaataatt 198  Q
    ||||||||| || ||| |||| | ||||  |||| ||| ||||||| |||| | ||||||| |||||||||||||| |||  |||||||||||| |||      
T  25261198 accctaaacccttaaagcgataaaacacataaataatacaatcatacaaaggatttagatgctacttcttctataaattc--aaacatgcatgattaa-- 25261293  T
Q  199 ttttccaaacatcgcagcagaa 220  Q
    ||||| ||||||| ||||||||    
T  25261294 ttttcaaaacatcacagcagaa 25261315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 5064239 - 5064277
Alignment:
Q  1 accagtccctgtggagacgataacaaaaatacttacttt 39  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  5064239 accaatccctgtgaagacgataacaaaaatacttacttt 5064277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 22222107 - 22222071
Alignment:
Q  4 agtccctgtggagacgata-acaaaaatacttacttt 39  Q
    ||||||||||||||||||| |||||||||||||||||    
T  22222107 agtccctgtggagacgatacacaaaaatacttacttt 22222071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 22226938 - 22226902
Alignment:
Q  4 agtccctgtggagacgata-acaaaaatacttacttt 39  Q
    ||||||||||||||||||| |||||||||||||||||    
T  22226938 agtccctgtggagacgatacacaaaaatacttacttt 22226902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 22228449 - 22228413
Alignment:
Q  4 agtccctgtggagacgata-acaaaaatacttacttt 39  Q
    ||||||||||||||||||| |||||||||||||||||    
T  22228449 agtccctgtggagacgatacacaaaaatacttacttt 22228413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 22233280 - 22233244
Alignment:
Q  4 agtccctgtggagacgata-acaaaaatacttacttt 39  Q
    ||||||||||||||||||| |||||||||||||||||    
T  22233280 agtccctgtggagacgatacacaaaaatacttacttt 22233244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 26724686 - 26724815
Alignment:
Q  93 tgtaacaccctaaactctaaaaccgattacacacgcaaatgatataa-tcatataaagaacttagatgttacttcttctataatttcaaaaacatgcatg 191  Q
    |||||||||||||||||| ||| |||| |   | |||||| |||||| ||||  |||||| ||||||| |||||||||||||| ||| |||||||||||     
T  26724686 tgtaacaccctaaactcttaaagcgataaattatgcaaataatataaatcatgcaaagaatttagatgctacttcttctataagttc-aaaacatgcata 26724784  T
Q  192 aataattttt-tccaaacatcgcagcagaaa 221  Q
    |||||||||| || |||||||||||| ||||    
T  26724785 aataatttttctcaaaacatcgcagcggaaa 26724815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 42729111 - 42729059
Alignment:
Q  1 accagtccctgtggagacgataacaaaaatacttactttgtatacaacatcat 53  Q
    |||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  42729111 accagtccctgtggagacgataacaaaaatacttacttttgatactacatcat 42729059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9335389 - 9335440
Alignment:
Q  1 accagtccctgtggagacgataacaaaaatacttactttgtatacaacatca 52  Q
    ||||||||||||||||||||||||| |||||||||||||  ||||| |||||    
T  9335389 accagtccctgtggagacgataacataaatacttacttttgatacatcatca 9335440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 3413533 - 3413584
Alignment:
Q  1 accagtccctgtggagacgataacaaaaatacttactttgtatacaacatca 52  Q
    |||||||| |||||||||||| |||||||||||||||||  |||| ||||||    
T  3413533 accagtccatgtggagacgatgacaaaaatacttacttttgatactacatca 3413584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4694454 - 4694505
Alignment:
Q  1 accagtccctgtggagacgataacaaaaatacttactttgtatacaacatca 52  Q
    |||||||| |||| |||||||||||||||||||||||||  |||| ||||||    
T  4694454 accagtccttgtgaagacgataacaaaaatacttacttttgatactacatca 4694505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 12919193 - 12919244
Alignment:
Q  1 accagtccctgtggagacgataacaaaaatacttactttgtatacaacatca 52  Q
    |||||||| ||||||||||||||| ||||||||||||||  |||| ||||||    
T  12919193 accagtccatgtggagacgataacgaaaatacttacttttgatactacatca 12919244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 163
Target Start/End: Original strand, 22652736 - 22652807
Alignment:
Q  92 atgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttac 163  Q
    ||||||||||||||||||||||| |||| |   |||| | ||||| ||| |||||||||| |||||||||||    
T  22652736 atgtaacaccctaaactctaaaagcgataaattacgctactgatacaattatataaagaatttagatgttac 22652807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 230
Target Start/End: Complemental strand, 24761593 - 24761515
Alignment:
Q  153 ttagatgttacttcttctataatttcaaaaacatgcatgaataattttt-tccaaacatcgcagcagaaaatcatatca 230  Q
    |||||||  |||||||||| || ||| ||||||||||| |||||||||| || |||||||||||| ||| || ||||||    
T  24761593 ttagatgccacttcttctacaagttccaaaacatgcataaataatttttctcaaaacatcgcagcggaatataatatca 24761515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 25340359 - 25340434
Alignment:
Q  153 ttagatgttacttcttctataatttcaaaaacatgcatgaataattttttccaaacatcgcagcagaaaatcatatca 230  Q
    ||||||| || |||||| |||| ||||||||||||||| ||||||||||  |||||||| |||| ||| || ||||||    
T  25340359 ttagatgctatttcttcaataagttcaaaaacatgcataaataattttt--caaacatcacagctgaatataatatca 25340434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 35796 - 35671
Alignment:
Q  93 tgtaacaccctaaactctaaaaccgattacacacgcaaatgatataa-tcatataaagaacttagatgttacttcttctataatttcaaaaacatgcatg 191  Q
    ||||||||||||||| || ||| |||| |  |||| |||| ||| || ||||| |||| | ||||||| |||||||||||||| |||  |||||||||||    
T  35796 tgtaacaccctaaacccttaaagcgataaaccacgtaaataatacaaatcatacaaaggatttagatgctacttcttctataagttc--aaacatgcatg 35699  T
Q  192 aataattttttccaaacatcgcagcagaa 220  Q
    ||||| |||||| ||||||||||||||||    
T  35698 aataa-tttttcaaaacatcgcagcagaa 35671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 21662397 - 21662470
Alignment:
Q  93 tgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttc 166  Q
    ||||||| | |||||||||||| |||| |||||||||||||||| | |||||||||||| |||||| |||||||    
T  21662397 tgtaacatcttaaactctaaaagcgataacacacgcaaatgatacattcatataaagaatttagatattacttc 21662470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 19707319 - 19707395
Alignment:
Q  153 ttagatgttacttcttctataatttcaaaaacatgcatgaataattttttccaaacatcgcagcagaaaatcatatca 230  Q
    ||||||| |||||||||||||| ||| ||||||||||| ||||| |||||| |||||||||||| ||| || ||||||    
T  19707319 ttagatgctacttcttctataagttccaaaacatgcataaataa-tttttcaaaacatcgcagcggaatataatatca 19707395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 20628595 - 20628644
Alignment:
Q  3 cagtccctgtggagacgataacaaaaatacttactttgtatacaacatca 52  Q
    |||| ||||||||||||||||||||||||||||||||  |||| ||||||    
T  20628595 cagtacctgtggagacgataacaaaaatacttacttttgatactacatca 20628644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 4501096 - 4501048
Alignment:
Q  4 agtccctgtggagacgataacaaaaatacttactttgtatacaacatca 52  Q
    ||||| ||||||||||||||||||||||||||||||  |||| ||||||    
T  4501096 agtccatgtggagacgataacaaaaatacttacttttgatactacatca 4501048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 4644568 - 4644616
Alignment:
Q  4 agtccctgtggagacgataacaaaaatacttactttgtatacaacatca 52  Q
    ||||| ||||||||||||||||||||||||||||||  |||| ||||||    
T  4644568 agtccttgtggagacgataacaaaaatacttacttttgatactacatca 4644616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 38278826 - 38278764
Alignment:
Q  153 ttagatgttacttcttctataatttcaaaaacatgcatgaataattttttccaaacatcgcagc 216  Q
    |||||||||||||||||||||| ||| | ||||||||| ||| |||||||| ||||||| ||||    
T  38278826 ttagatgttacttcttctataagttctagaacatgcat-aattattttttcaaaacatcacagc 38278764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 10929181 - 10929231
Alignment:
Q  125 acgcaaatgatataatcatataaagaacttagatgttacttcttctataat 175  Q
    |||| ||||||| |||||||||||||| |||||||||| |||||| |||||    
T  10929181 acgctaatgatacaatcatataaagaatttagatgttatttcttcaataat 10929231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27900508 - 27900455
Alignment:
Q  1 accagtccctgtggagacgataacaaaaatacttactttgtatacaacatcatt 54  Q
    |||||||| |||||| ||||||||| |||||||||||||  |||| ||||||||    
T  27900508 accagtccatgtggaaacgataacataaatacttacttttgatactacatcatt 27900455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 4506418 - 4506374
Alignment:
Q  8 cctgtggagacgataacaaaaatacttactttgtatacaacatca 52  Q
    |||||||||| |||||||||||||||||||||  |||| ||||||    
T  4506418 cctgtggagatgataacaaaaatacttacttttgatactacatca 4506374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 12800892 - 12800971
Alignment:
Q  138 aatcatataaagaacttagatgttacttcttctataatttcaaaaacatgcatgaataattttttccaaacatcgcagcagaa 220  Q
    |||||||||||||| ||||||| ||||||||  |||| |||   ||||||||| ||||||||| || | ||||| ||||||||    
T  12800892 aatcatataaagaatttagatgctacttctttaataagttc---aacatgcataaataattttctcaagacatctcagcagaa 12800971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 16279747 - 16279830
Alignment:
Q  92 atgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatt 176  Q
    |||||||||| |||||||||||| |||| |   |||| ||||||| |||||||| | ||| ||||||||||||| ||| ||||||    
T  16279747 atgtaacaccgtaaactctaaaagcgataaattacgctaatgatacaatcatat-acgaatttagatgttacttattcaataatt 16279830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 49956 - 50040
Alignment:
Q  93 tgtaacaccctaaactctaaaaccgattacac-acgcaaatgatataatcatataaagaacttagatgttacttcttctataatt 176  Q
    ||||||||| |||||||||||| |||| | |  |||||||||||| | |||||||||||| ||||||||||||||||| ||||||    
T  49956 tgtaacaccataaactctaaaagcgataaaattacgcaaatgatacagtcatataaagaatttagatgttacttcttcaataatt 50040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 202382 - 202331
Alignment:
Q  1 accagtccctgtggagacgataacaaaaatacttactttgtatacaacatca 52  Q
    ||||||||||||||||||||||||| |||||||||||||  |||| ||||||    
T  202382 accagtccctgtggagacgataacataaatacttacttttgatactacatca 202331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13105185 - 13105134
Alignment:
Q  1 accagtccctgtggagacgataacaaaaatacttactttgtatacaacatca 52  Q
    |||||||| ||||||||||||||||||||||||||||||  |||| ||||||    
T  13105185 accagtccatgtggagacgataacaaaaatacttacttttgatactacatca 13105134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 1559795 - 1559857
Alignment:
Q  153 ttagatgttacttcttctataatttcaaaaacatgcatgaataattttt-tccaaacatcgca 214  Q
    ||||||| |||||||||||||||||| ||||||| ||| |||||||||| || ||||||||||    
T  1559795 ttagatgctacttcttctataatttccaaaacatacataaataatttttctcaaaacatcgca 1559857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1051202 - 1051148
Alignment:
Q  1 accagtccctgtggagacgataaca-aaaatacttactttgtatacaacatcatt 54  Q
    |||||||||| |||||||||||||| ||||||||||||||  |||| ||||||||    
T  1051202 accagtccctatggagacgataacaaaaaatacttacttttgatactacatcatt 1051148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 23295587 - 23295505
Alignment:
Q  146 aaagaacttagatgttacttcttctataatttcaaaaacatgcatgaataattttttccaaacatcgcagcagaaaatcatatca 230  Q
    |||||| ||||||| |||||||||||||| |   ||||||| ||| ||||||||||  ||||||||||||| ||| || ||||||    
T  23295587 aaagaatttagatgctacttcttctataagtc--aaaacatacataaataatttttctcaaacatcgcagcggaatataatatca 23295505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 230
Target Start/End: Original strand, 6777310 - 6777447
Alignment:
Q  92 atgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataatttcaaaaacatgcatg 191  Q
    |||||||||||||||| || ||| |||  |  ||||||||| ||| ||| ||| |||| |  |||||  |||||||||||||| | ||||  ||||||||    
T  6777310 atgtaacaccctaaacccttaaagcgagaaatcacgcaaataatacaattatacaaaggatctagattctacttcttctataagtccaaa--catgcatg 6777407  T
Q  192 aataa-ttttttccaaacatcgcagcagaaaatcatatca 230  Q
    | ||| ||||||| ||||||| |||| |||||| ||||||    
T  6777408 agtaatttttttcaaaacatcacagcggaaaataatatca 6777447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 18765666 - 18765618
Alignment:
Q  4 agtccctgtggagacgataacaaaaatacttactttgtatacaacatca 52  Q
    ||||||| |||||||||||||| |||||||||||||  |||| ||||||    
T  18765666 agtccctatggagacgataacagaaatacttacttttgatactacatca 18765618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 24386 - 24305
Alignment:
Q  93 tgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttctataa 174  Q
    |||||||||||||||||| ||| |||| |  ||||||||| ||||||||||  | |||| ||||||||||| ||||| ||||    
T  24386 tgtaacaccctaaactcttaaagcgataaatcacgcaaatcatataatcattcagagaatttagatgttacatcttcaataa 24305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0914 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0914
Description:

Target: scaffold0914; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 731 - 655
Alignment:
Q  93 tgtaacaccctaaactctaaaaccgattacacacgcaaatgatataatcatataaagaacttagatgttacttcttc 169  Q
    |||||||||||||||||||||| | || |   |||| ||||||| |||||||||||  | |||||||||||||||||    
T  731 tgtaacaccctaaactctaaaagcaataaattacgctaatgatacaatcatataaatcatttagatgttacttcttc 655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 4995 - 4912
Alignment:
Q  138 aatcatataaagaacttagatgttacttcttctataatttcaaaaacatgcatgaataattttttccaaacatcgcagcagaaaa 222  Q
    ||||||| |||| | ||||||| |||||||||||||| | ||||| ||||||| |||||||||   ||||||||||||| |||||    
T  4995 aatcatacaaaggatttagatgctacttcttctataagtccaaaa-catgcataaataattttactcaaacatcgcagcggaaaa 4912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 18010 - 18061
Alignment:
Q  1 accagtccctgtggagacgataacaaaaatacttactttgtatacaacatca 52  Q
    |||||||||||||||||||||||| |||| |||||||||  |||| ||||||    
T  18010 accagtccctgtggagacgataactaaaaaacttacttttgatactacatca 18061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 230
Target Start/End: Complemental strand, 4090 - 4012
Alignment:
Q  153 ttagatgttacttcttctataatttcaaaaacatgcatgaataattttt-tccaaacatcgcagcagaaaatcatatca 230  Q
    |||||||  |||||||||| || ||| ||||||||||| |||||||||| || |||||||||||| ||| || ||||||    
T  4090 ttagatgccacttcttctacaagttccaaaacatgcataaataatttttctcaaaacatcgcagcggaatataatatca 4012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 64062 - 64116
Alignment:
Q  128 caaatgatataatcatataaagaacttagatgttacttcttctataatttcaaaa 182  Q
    ||||||||| ||||||||||| || ||| ||| |||||||||||||| |||||||    
T  64062 caaatgatacaatcatataaataatttatatgctacttcttctataagttcaaaa 64116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 230
Target Start/End: Complemental strand, 101374 - 101298
Alignment:
Q  153 ttagatgttacttcttctataatttcaaaaacatgcatgaataattttttccaaacatcgcagcagaaaatcatatca 230  Q
    ||||||| |||||||||||||| | ||||| ||||||| ||||||||| || ||||||| |||| ||| || ||||||    
T  101374 ttagatgctacttcttctataagtccaaaa-catgcataaataattttctcaaaacatcacagcggaatataatatca 101298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1121 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1121
Description:

Target: scaffold1121; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 2316 - 2398
Alignment:
Q  138 aatcatataaagaacttagatgttacttcttctataatttcaaaaacatgcatgaataattttttccaaacatcgcagcagaaaa 222  Q
    ||||||| |||||| ||||||| |||||||||||||| | |  ||||||| || ||| ||||| || |||||||||||| |||||    
T  2316 aatcatacaaagaatttagatgctacttcttctataaatcc--aaacatgtataaatcattttatcaaaacatcgcagcggaaaa 2398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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