View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5034_low_22 (Length: 233)

Name: NF5034_low_22
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5034_low_22
NF5034_low_22
[»] chr4 (2 HSPs)
chr4 (18-214)||(39482305-39482496)
chr4 (21-211)||(51862092-51862277)
[»] chr3 (3 HSPs)
chr3 (21-155)||(22157786-22157921)
chr3 (119-214)||(22157700-22157790)
chr3 (18-208)||(9765846-9766030)
[»] chr7 (2 HSPs)
chr7 (21-143)||(9332858-9332980)
chr7 (119-211)||(9332763-9332849)
[»] chr8 (3 HSPs)
chr8 (151-207)||(22647851-22647907)
chr8 (78-143)||(22647938-22648003)
chr8 (18-134)||(43651549-43651664)
[»] scaffold0755 (2 HSPs)
scaffold0755 (78-143)||(5435-5500)
scaffold0755 (151-207)||(5531-5584)
[»] chr5 (3 HSPs)
chr5 (78-143)||(27030052-27030117)
chr5 (151-207)||(27030148-27030204)
chr5 (18-208)||(21114689-21114873)
[»] chr6 (1 HSPs)
chr6 (151-211)||(13550189-13550249)
[»] chr2 (1 HSPs)
chr2 (156-184)||(24863506-24863534)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 39482496 - 39482305
Alignment:
Q  18 caaattacaattgaagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatctattg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39482496 caaattacaattgaagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatccattg 39482397  T
Q  118 gtttcagaacaaagagaaagatacatactttcatttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagttggtcat 214  Q
    ||||||||||||||||||||||||||||||     |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||    
T  39482396 gtttcagaacaaagagaaagatacatactt-----tcatcttacacttcttatttttaaattcaatttcagtatgaatggatgatttagttggtcat 39482305  T

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Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 51862092 - 51862277
Alignment:
Q  21 attacaattgaagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatctattggtt 120  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||    
T  51862092 attacaattgaagagacatttcatctatatttagctagggaaacatgacagggtttcaccaaatatcaatatttattatctcttttatcatccattgatt 51862191  T
Q  121 tcagaacaaagagaaagatacatactttcatttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagttggt 211  Q
    |||||||||||||||||||||||||     |||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  51862192 tcagaacaaagagaaagatacatac-----tttcatcttacatttcttatttttaatttcaatttcagtatgaatggatgatttagttggt 51862277  T

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Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 22157921 - 22157786
Alignment:
Q  21 attacaattgaagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatctattggtt 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| ||    
T  22157921 attacaattgaagagacatttcatctatatttagatagggaaacatgacaggatttcaccaaatatcaatatttattatctcttttatcatccattgatt 22157822  T
Q  121 tcagaacaaagagaaagataca-tactttcatttca 155  Q
    |||||||||||||||||||||| | |||||||||||    
T  22157821 tcagaacaaagagaaagatacatttctttcatttca 22157786  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 22157790 - 22157700
Alignment:
Q  119 tttcagaacaaagagaaagatacatactttcatttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagttggtcat 214  Q
    |||||||||||||||||||||||||||||||||     ||||||||||||| ||| |||||||||| ||| |||||||||||||||||||||||||    
T  22157790 tttcagaacaaagagaaagatacatactttcat-----cttacacttcttaatttcaatttcaatttcagtatgaatggatgatttagttggtcat 22157700  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 9765846 - 9766030
Alignment:
Q  18 caaattacaattg-aagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatctatt 116  Q
    ||||||||||||| ||||||||||||||| | |  |||| ||| |||||||||||| ||| ||| || ||| |||||| ||||||||| ||| ||| | |    
T  9765846 caaattacaattgcaagagacatttcatccaaagatagagagg-aaacatgacagg-tttcaccgaagatctatatttcttatctcttctatgatccaat 9765943  T
Q  117 ggtttcagaacaaagagaaagatacatactttcatttcatcttacacttctta-tttttaatttcaattccagcatgaatggatgatttagtt 208  Q
    | |||||||||||||||  |||||||   ||||| | ||| | |||||||||| |||||||||||||||  || |||||||||| ||||||||    
T  9765944 gatttcagaacaaagag--agataca---tttca-tccatttgacacttcttattttttaatttcaattttagtatgaatggataatttagtt 9766030  T

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Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 9332980 - 9332858
Alignment:
Q  21 attacaattgaagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatctattggtt 120  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||    
T  9332980 attacaattgaagagacatttcatctatctttagatagggaaacatgacagggtttcaccaaatatcaatatttattatctcttttatcatccattgatt 9332881  T
Q  121 tcagaacaaagagaaagatacat 143  Q
    |||||||||||||||| ||||||    
T  9332880 tcagaacaaagagaaaaatacat 9332858  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 9332849 - 9332763
Alignment:
Q  119 tttcagaacaaagagaaagatacatactttcatttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagttggt 211  Q
    |||||||||||||||||| ||||||||||||||     |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  9332849 tttcagaacaaagagaaa-atacatactttcat-----cttacacttcttatttttaatttcaatttcagtatgaatggatgatttagttggt 9332763  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 22647907 - 22647851
Alignment:
Q  151 tttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagt 207  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||    
T  22647907 tttcatcttacacttcttatttttaatttcaatttcagtatgaatggattatttagt 22647851  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 22648003 - 22647938
Alignment:
Q  78 accaaatatcaatatttattatctcttttatcatctattggtttcagaacaaagagaaagatacat 143  Q
    |||||| ||| |||||| ||||||||||||||||| |||| |||||||||| ||| ||||||||||    
T  22648003 accaaacatctatatttcttatctcttttatcatccattgatttcagaacatagataaagatacat 22647938  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 43651664 - 43651549
Alignment:
Q  18 caaattacaattg-aagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatctatt 116  Q
    ||||||||||||| ||||||||||||||| | |  |||| ||| |||||||||||| ||| ||| || ||| |||||| ||||||||||||| ||| | |    
T  43651664 caaattacaattgcaagagacatttcatccaaagatagagagg-aaacatgacagg-tttcaccgaagatctatatttcttatctcttttatgatccaat 43651567  T
Q  117 ggtttcagaacaaagaga 134  Q
    | ||||| ||||||||||    
T  43651566 gatttcataacaaagaga 43651549  T

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Target: scaffold0755 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 5435 - 5500
Alignment:
Q  78 accaaatatcaatatttattatctcttttatcatctattggtttcagaacaaagagaaagatacat 143  Q
    |||||| ||| |||||| ||||||||||||||||| |||| |||||||||| ||||||||||||||    
T  5435 accaaacatctatatttcttatctcttttatcatccattgatttcagaacatagagaaagatacat 5500  T

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Target: scaffold0755; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 5531 - 5584
Alignment:
Q  151 tttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagt 207  Q
    |||||||||||||||   |||||||||||||||| ||| |||||||||| |||||||    
T  5531 tttcatcttacactt---atttttaatttcaatttcagtatgaatggattatttagt 5584  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 27030052 - 27030117
Alignment:
Q  78 accaaatatcaatatttattatctcttttatcatctattggtttcagaacaaagagaaagatacat 143  Q
    |||||| ||| |||||| ||||||||||||||||| |||| |||||||||| ||||||||||||||    
T  27030052 accaaacatctatatttcttatctcttttatcatccattgatttcagaacatagagaaagatacat 27030117  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 27030148 - 27030204
Alignment:
Q  151 tttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagt 207  Q
    ||||||||||||||||||||||||||||||||||  || |||||||||| |||||||    
T  27030148 tttcatcttacacttcttatttttaatttcaattttagtatgaatggattatttagt 27030204  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 21114873 - 21114689
Alignment:
Q  18 caaattacaattg-aagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatctatt 116  Q
    ||||||||||||| ||||||||||||||| | |  |||| ||| |||||||||||| ||| ||| || ||| |||||| ||||||||||||| ||| | |    
T  21114873 caaattacaattgcaagagacatttcatccaaagatagagagg-aaacatgacagg-tttcaccgaagatctatatttcttatctcttttatgatccaat 21114776  T
Q  117 ggtttcagaacaaagagaaagatacatactttcatttcatcttacacttctta-tttttaatttcaattccagcatgaatggatgatttagtt 208  Q
    | |||||||||||||||  |||||||   |||||| | || | |||||||||| |||||||||||||||  || ||||||| || ||||||||    
T  21114775 gatttcagaacaaagag--agataca---tttcatct-atttgacacttcttattttttaatttcaattttagtatgaatgaataatttagtt 21114689  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 13550249 - 13550189
Alignment:
Q  151 tttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagttggt 211  Q
    ||||||| |||||||||||||||| ||||||||| ||| |||||||||| |||||||||||    
T  13550249 tttcatcatacacttcttattttttatttcaatttcagtatgaatggataatttagttggt 13550189  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 184
Target Start/End: Complemental strand, 24863534 - 24863506
Alignment:
Q  156 tcttacacttcttatttttaatttcaatt 184  Q
    |||||||||||||||||||||||||||||    
T  24863534 tcttacacttcttatttttaatttcaatt 24863506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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