View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5034_low_4 (Length: 515)
Name: NF5034_low_4
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 10 - 515
Target Start/End: Complemental strand, 45792676 - 45792171
Alignment:
| Q |
10 |
gcagagacaaacaaaacaattagcacagggataagtgatgaaagtttcaggccttgattagtgggatctttcagttttgttccggcgctacacaggccac |
109 |
Q |
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| T |
45792676 |
gcagagacaaacaaaacaattagcacagggataagtgatgaaagtttcaggccttgattagtgggatctttcagttttgttccggcgctacacaggccac |
45792577 |
T |
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| Q |
110 |
attatgtatgaacattatttttagtagttatatttgtatggtcaaacccaaaaacagtttgatgtgttggggcgcgggttcaaatccgcaattctccact |
209 |
Q |
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| T |
45792576 |
attatgtatgaacattatttttagtagttatatttgtatggtcaaacccaaaaacagtttgatgtgttggggcgcgggttcaaatccgcaattctccact |
45792477 |
T |
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| Q |
210 |
tcttcacccttaatgtgtgggactctcgccactaggctactcaaggagctcatggtgctgctaggtcacagagccaccaagccaaacttctgattaatca |
309 |
Q |
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| T |
45792476 |
tcttcacacttaatgtgtgggactctcgccactaggctactcaaggagctcatggtgctgctaggtcacagagccaccaagccaaacttctgattaatca |
45792377 |
T |
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| Q |
310 |
ttttgatagatcaactaataaactatctccacatattagagatagagggtgacataatatggcatttttattcatattctgagaatcatttaggctaatc |
409 |
Q |
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| T |
45792376 |
ttttgattgatcaactaataaactatctccacatattagagatagagggtgacataatatggcatttttgttcatattctgagaatcatttaggctaatc |
45792277 |
T |
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| Q |
410 |
tggttcatgaaaacaaaattatttcaagaaaggtaccaaatgctctttgatctgattctcgtgcatgttcaaatgccttctctcctttagcccttgaata |
509 |
Q |
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| T |
45792276 |
tggttcatgaaaacaaaattatttcaagaaaggtaccaaatgctctttgatctgattctcatgcatgttcaaatgccttctctcctttagcccttgaata |
45792177 |
T |
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| Q |
510 |
aaagat |
515 |
Q |
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| T |
45792176 |
aaagat |
45792171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 43818370 - 43818433
Alignment:
| Q |
246 |
ctactcaaggagctcatggtgctgctaggtcacagagccaccaagccaaacttctgattaatca |
309 |
Q |
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| T |
43818370 |
ctactcaaggagctcatagtgttgttagatcacagagccaccaagccaaacttttgactaatca |
43818433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 35997029 - 35997087
Alignment:
| Q |
185 |
gggttcaaatccgcaattctccacttcttcacccttaatgtgtgggactctcgccacta |
243 |
Q |
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| T |
35997029 |
gggttcaaattccgaattctccacttcttcacacataatgtgtgtgactctagccacta |
35997087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 43818457 - 43818502
Alignment:
| Q |
300 |
tgattaatcattttgatagatcaactaataaactatctccacatat |
345 |
Q |
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| T |
43818457 |
tgattaatcagtttgataaatcaactaataaaccatctccatatat |
43818502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 7339559 - 7339611
Alignment:
| Q |
198 |
caattctccacttcttcacccttaatgtgtgggactctcgccactaggctact |
250 |
Q |
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| T |
7339559 |
caattcttcacttcttcacacataatgtgtgtgaatctagccactaggctact |
7339611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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