View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5034_low_6 (Length: 440)
Name: NF5034_low_6
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 15 - 425
Target Start/End: Complemental strand, 3878841 - 3878431
Alignment:
| Q |
15 |
ggggtaaacagaaaataagatttatcaattatcatttcgataccaccttattagagggatctcggttagactcttgatgcctccttcgtctagaatcaaa |
114 |
Q |
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| T |
3878841 |
ggggtaaacagaaaataagatttatcaattatcatttcgataccaccttattagagggctctcggttagactcttgatgcctccttcgtctagaatcaaa |
3878742 |
T |
|
| Q |
115 |
taccggatagaacgtagaccaccattcatgcagtagtactccatctgaagaatcaagcattgaacccataaattccctgcctgtataaaatcaatttcca |
214 |
Q |
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| T |
3878741 |
taccggatagaacgtagaccaccattcatgcagtagtactccatctgaagaatcaagcattgaacccataaattccctgcctgtataaaatcaatttcca |
3878642 |
T |
|
| Q |
215 |
aggagatttactacatcaatataaatactaaaaatcaatgaatttccagcaatattcagaataatatataatttgatctaaaagtacatcaaaattaaat |
314 |
Q |
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| T |
3878641 |
aggagatttactacatcaatataaatactgaaaatcaatgaatttccagcaatattcagaataatatataatttgatctaaaagtacatcaaaattaaat |
3878542 |
T |
|
| Q |
315 |
tcatgattaaaagaacagcagttaattatctcaaggcaagctcatcaatcaatcaattatacaacaatgtaccccaaaatataaactctccagcttcagt |
414 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3878541 |
tcatgattaaaagaacaacagttaattatctcaaggcaagctcatcaatcaatcaattatacaacaatgtaccccaaaatataaactctcctgcttcagt |
3878442 |
T |
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| Q |
415 |
gcagtaaaaag |
425 |
Q |
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| T |
3878441 |
gcagtaaaaag |
3878431 |
T |
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