View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5034_low_7 (Length: 421)
Name: NF5034_low_7
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Original strand, 43933033 - 43933428
Alignment:
| Q |
18 |
agtatatgataaaaggatgtaaaccatgagaatcatcaaagtcagtctcatagttctaaactgcggtctcacactataaaggtttcagaggtctctgaaa |
117 |
Q |
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| T |
43933033 |
agtatatgataaaaggatgtaaaccatgagaatcatcaaagtcagtctcatagttctaaactgcggtctcacactataaaggtttcagaggtctctgaaa |
43933132 |
T |
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| Q |
118 |
cgtcattgcaactgaaattacggctgcatatgcctgtattttgttgcaatattaaggttcgcaactacgatcatgactacagctgcaatttctaattatg |
217 |
Q |
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| T |
43933133 |
cgtcattgcaactgaaattacggctgcatatgcctgtattttgttgcaatattaaggttcgcaactacgatcataactacagctgcaatttctaattatg |
43933232 |
T |
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| Q |
218 |
gttggtatatactatatataaatagaaatgattgaagaaacagaacttactgaaatgatatttggatggcgcaaacgaaacagcaaagcaacctcagaag |
317 |
Q |
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| T |
43933233 |
gttggtatatactatatataaatagaaatgattgaagaaacagaacttactgaaatgatatttggatggcgcaaacgaaacagcaaagcaacctcagaag |
43933332 |
T |
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| Q |
318 |
taaagtgtttctcaagcaaagcagccaattcctcatcctcttctggttgactaacaagcttaatagcaacatccatgttcttatagatacctctgt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43933333 |
taaagtgtttctcaagcaaagcagccaattcctcatcctcttctggttgactaacaagcttaatagcaacatccatgttcttatagatacctctgt |
43933428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 391
Target Start/End: Original strand, 35132893 - 35132985
Alignment:
| Q |
299 |
agcaaagcaacctcagaagtaaagtgtttctcaagcaaagcagccaattcctcatcctcttctggttgactaacaagcttaatagcaacatcc |
391 |
Q |
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||||||||||| ||||||||||| || |||||||| |||| |||||| || ||||| ||||| || ||||| ||||||||||| ||||||||| |
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| T |
35132893 |
agcaaagcaacttcagaagtaaattgcttctcaagaaaagaagccaaatcttcatcttcttcaggctgactcacaagcttaattgcaacatcc |
35132985 |
T |
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