View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5034_low_8 (Length: 399)
Name: NF5034_low_8
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 49509824 - 49510207
Alignment:
| Q |
1 |
atgaactacctagaaaatactgattttcaatgtagatgaaattcttagctcgtcgaatagcgtttatgtaggcatcttgaatgcttctatcaatgatgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49509824 |
atgaactacctagaaaatactgattttcaatgtagatgaaattcttagctcgtcgaatagcgtttatgtaggcatcttgaatgcttctatcaatgatgtt |
49509923 |
T |
|
| Q |
101 |
atcttttccagtaacaagacctttttcagcggcttctgttggatcttgagggaagccagaagcagcaccagcatcgatcgatctaaacaactgaacattc |
200 |
Q |
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| T |
49509924 |
atcttttccagtaacaagacctttttcggcggcttctgttggatcttgagggaagccagaagcagcaccagcatcgattgatctaaacaactgaacattc |
49510023 |
T |
|
| Q |
201 |
catgtattgttttgatttgccgtggcaacattcgatacacgagcaatatcatattcacgaaacatgctcgaaggtagtggaattaattgttttccaactt |
300 |
Q |
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| T |
49510024 |
catgtattgttttgatttgccgtggcaacattcgatacacgagcaatatcatattcacgaaacatgctcgaaggtagtggaattaattgttttccaactt |
49510123 |
T |
|
| Q |
301 |
gcttttcccatctttgctcaaaattgcacaacacatcccaagcaacaggtccttctagtttacaatgaatatcatgccatggct |
384 |
Q |
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| T |
49510124 |
gcttttcccatctttgctcaaaattgcacaacacatcccaagcaacaggtccttctagtttacaatgaatatcatgccatggct |
49510207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 202
Target Start/End: Original strand, 49520972 - 49521171
Alignment:
| Q |
3 |
gaactacctagaaaatactgattttcaatgtagatgaaattcttagctcgtcgaatagcgtttatgtaggcatcttgaatgcttctatcaatgatgttat |
102 |
Q |
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| T |
49520972 |
gaactccctaggaaatactgattttcaatgtagatgaagttttttgctcttcgtatagcatttatataggcatcttgaatgcttctatcaatgatgttgt |
49521071 |
T |
|
| Q |
103 |
cttttccagtaacaagacctttttcagcggcttctgttggatcttgagggaagccagaagcagcaccagcatcgatcgatctaaacaactgaacattcca |
202 |
Q |
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|||||||| ||||||| ||| ||| |||| |||| ||||||||||| |||| |||||||| |||| || |||||||||||||||||| |||| |
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| T |
49521072 |
cttttccactaacaaggcctaattctataacttcatttggtgcttgagggaagttagaaacagcaccaccatcaatggatctaaacaactgaacactcca |
49521171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 285 - 379
Target Start/End: Original strand, 49521251 - 49521345
Alignment:
| Q |
285 |
aattgttttccaacttgcttttcccatctttgctcaaaattgcacaacacatcccaagcaacaggtccttctagtttacaatgaatatcatgcca |
379 |
Q |
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| T |
49521251 |
aattgcttcccaacttgcttttcccacctctgctcaaaattgtacaacacatcccatgcaataggtccttctagcttgcagtgaatatcatgcca |
49521345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 44662729 - 44662641
Alignment:
| Q |
15 |
aaatactgattttcaatgtagatgaaattcttagctcgtcgaatagcgtttatgtaggcatcttgaatgcttctatcaatgatgttatc |
103 |
Q |
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||||| |||||||||||||||||||||||||| || ||||||||||| || || || ||||||||||| || ||||| || |||||||| |
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| T |
44662729 |
aaatattgattttcaatgtagatgaaattctttgcgcgtcgaatagcattgatataagcatcttgaatactcctatctattatgttatc |
44662641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 2416329 - 2416424
Alignment:
| Q |
15 |
aaatactgattttcaatgtagatgaaattcttagctcgtcgaatagcgtttatgtaggcatcttgaatgcttctatcaatgatgttatcttttcca |
110 |
Q |
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||||||||||||||||| |||||||| ||||| || || |||||||| || || || |||||||||||||| | ||| ||||| ||||| |||||| |
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| T |
2416329 |
aaatactgattttcaatatagatgaagttctttgcacgccgaatagcattaatataagcatcttgaatgctacgatcgatgatattatcctttcca |
2416424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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