View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5034_low_9 (Length: 366)
Name: NF5034_low_9
Description: NF5034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5034_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 18275902 - 18276241
Alignment:
| Q |
1 |
ttatacaaatattatttatcttcatctattgaatcatatcgtgaatccaatagtcgaaattaattttgaaaatggttttaaatccacgttttggcaatat |
100 |
Q |
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| T |
18275902 |
ttatacaaatattatttatcttcatctattgaatcatatcgtgaatccaa-agtcaaaattaattttgaaaatggttttaaatccacgttttggcaatat |
18276000 |
T |
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| Q |
101 |
tttgaaagggtatctatctaatccccttgtcgatacctatatgttacactctaagaaatgtgtcaaacacctcatttagatatcttactnnnnnnnnnnn |
200 |
Q |
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| T |
18276001 |
tttgaaagggtatctatctaatccccttgtcgatacc--tatgttacactctaagaaatgtgtcaaacacctcatttagatatcttactaaaaaaaaaaa |
18276098 |
T |
|
| Q |
201 |
ttctctctccaacaaagatgagacttgttatggtttgcactagtagttcgagagtaaattttcacaccagtctcattttaattgtcgggtttggattgtg |
300 |
Q |
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| T |
18276099 |
-tatctctccaacaaagatgagacttgttatggtttgcactagtagttcgagagtaaattttcacaccaatctcattttaattgtcgggtttagattgtg |
18276197 |
T |
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| Q |
301 |
taaagttcttaagagaatgattagttgaattaattttaacagta |
344 |
Q |
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| T |
18276198 |
taaagttcttaagaaaatgattagttgaattaattttaacagta |
18276241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 29439925 - 29439969
Alignment:
| Q |
305 |
gttcttaagagaatgattagttgaattaattttaacagtaaaatt |
349 |
Q |
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| T |
29439925 |
gttcttaagaaaatgattagttgaattaattttaaaagtaaaatt |
29439969 |
T |
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