View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5035-Insertion-3 (Length: 735)

Name: NF5035-Insertion-3
Description: NF5035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5035-Insertion-3
NF5035-Insertion-3
[»] chr3 (2 HSPs)
chr3 (8-735)||(29207935-29208665)
chr3 (296-388)||(55469937-55470029)
[»] chr4 (3 HSPs)
chr4 (495-646)||(38378088-38378240)
chr4 (684-733)||(38377733-38377782)
chr4 (335-381)||(13298529-13298575)
[»] chr5 (4 HSPs)
chr5 (304-381)||(39647243-39647320)
chr5 (335-384)||(39647139-39647188)
chr5 (336-394)||(8928401-8928459)
chr5 (320-386)||(11257713-11257779)
[»] chr7 (4 HSPs)
chr7 (322-383)||(2219538-2219599)
chr7 (309-394)||(23117361-23117446)
chr7 (320-404)||(24672266-24672350)
chr7 (335-386)||(23218630-23218681)
[»] chr1 (2 HSPs)
chr1 (321-386)||(33651641-33651706)
chr1 (335-386)||(6025980-6026031)
[»] chr6 (2 HSPs)
chr6 (335-386)||(2732936-2732987)
chr6 (320-358)||(17333528-17333566)


Alignment Details
Target: chr3 (Bit Score: 630; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 8 - 735
Target Start/End: Original strand, 29207935 - 29208665
Alignment:
Q  8 atatatgtgttattaaaagcacaaggtggcaatgcaactttgtttcatacatatataattgtgcttatttcaaaacaaaggttgtatcactatctag--- 104  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  29207935 atatatgtgttattaaaagcacaaggtgacaatgcaactt-gtttcatacatatataattgtgcttatttcaaaacaaaggttgtatcactatctagcta 29208033  T
Q  105 -tgaagtatgcaagctgttttgttgcttaagaaacacctcccattcatctcatttcatttactatcattaaggatgctacttttgacaattccataactt 203  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29208034 gtgaagtatgcaagatgttttgttgcttaagaaacacctcccattcatctcatttcatttactatcattaaggatgctacttttgacaattccataactt 29208133  T
Q  204 caatcttaagatgaaccatgaaatagaacaaaacaagtgcatgagaatcatcttcaatgacttctctttgtctaacaacattgtaaaatagcgttgttaa 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||    
T  29208134 caatcttaagatgaaccatgaaatagaacaaaacaagtgcatgagaatcatctttattgacttctctttgtccaacaacattgtaaaatagcgttgttaa 29208233  T
Q  304 atagtggtgctataacgctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgttttgaaatattggataca 403  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||| ||||||||    
T  29208234 atagtggtgctataacgctatagtgtaatagaatttgaacaaatcgttattgttccacgatacgctgtttagtacaaaatgttttgaaatagtggataca 29208333  T
Q  404 atgacgctatatatagcaccgttgcgtagctgagtttgaacaaaaactattttttgcaattagaaattatgttagagggtactgnnnnnnntctaggtat 503  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||       |||||||||    
T  29208334 atgacgctatatatagcactgttgcgtagctgagtttgaacaaaaactattttttgcaattagcaattatgttagagggtactgaaaaaaatctaggtat 29208433  T
Q  504 ctcaccattcctttagaatcagtactactccattgagatgaagattgtgaaccgttcttgacaaacttttggccatggaaaattaaggaaattgcaaaag 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29208434 ctcaccattcctttagaatcagtactactccattgagatgaagattgtgaaccgttcttgacaaacttttggccatggaaaattaaggaaaatgcaaaag 29208533  T
Q  604 aaagtgaaacaattaggacatagtattaattaactaagaggaagtagaacaaaactacattataaaaaattaatcactagtccaaccttcaaagtagatt 703  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29208534 aaagtgaaacaattaggacatagtattaattaactaagaggaagtagaacaaaactacattataaaaaattaatcactagtccaaccttcaaagtagatt 29208633  T
Q  704 tagtgtttgctctctccatgtttaagtggaat 735  Q
    ||||||||||||||||||||||||||||||||    
T  29208634 tagtgtttgctctctccatgtttaagtggaat 29208665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 296 - 388
Target Start/End: Complemental strand, 55470029 - 55469937
Alignment:
Q  296 gttgttaaatagtggtgctataacgctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtttt 388  Q
    ||||||||||||||| |||||| |||||||||||| |  ||||| |||||| || ||||||||  || |||||||| ||||||||||| ||||    
T  55470029 gttgttaaatagtggcgctataccgctatagtgtagcggaatttaaacaaaccgctattgttccgtggtatgctgtgtagtacaaaatatttt 55469937  T

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Target: chr4 (Bit Score: 71; Significance: 9e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 495 - 646
Target Start/End: Complemental strand, 38378240 - 38378088
Alignment:
Q  495 tctaggtatctcaccattcctttagaatcagtactactccattgagatgaagattgtgaaccgttcttgacaaacttttggccatggaaaattaaggaaa 594  Q
    |||||||||||||||||||||||||||||| || ||||||| ||||||||||| ||||||  |||||||||||||||||  ||   ||||||||||||||    
T  38378240 tctaggtatctcaccattcctttagaatcaataatactccaatgagatgaagactgtgaagtgttcttgacaaacttttcaccgcagaaaattaaggaaa 38378141  T
Q  595 ttgcaaa--agaaagtgaaacaattaggacatagtattaattaactaagaggaa 646  Q
     ||||||  |||| | |||||||||||||  |||||||||||||| ||||||||    
T  38378140 atgcaaagtagaatg-gaaacaattaggaattagtattaattaaccaagaggaa 38378088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 684 - 733
Target Start/End: Complemental strand, 38377782 - 38377733
Alignment:
Q  684 tccaaccttcaaagtagatttagtgtttgctctctccatgtttaagtgga 733  Q
    |||||||||||||  ||||| |||||||| ||||||||||||||||||||    
T  38377782 tccaaccttcaaaacagattcagtgtttggtctctccatgtttaagtgga 38377733  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 13298529 - 13298575
Alignment:
Q  335 aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaa 381  Q
    ||||||||||||||  ||||||||| ||||||||| |||||||||||    
T  13298529 aatttgaacaaatcactattgttctgtgatatgctatttagtacaaa 13298575  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 304 - 381
Target Start/End: Complemental strand, 39647320 - 39647243
Alignment:
Q  304 atagtggtgctataacgctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaa 381  Q
    |||||||||||||||||||||| ||||    |||||||| ||||||||||||||||  |||||||||||||| |||||    
T  39647320 atagtggtgctataacgctatactgtagtggaatttgaataaatcgttattgttctgcgatatgctgtttagcacaaa 39647243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 39647188 - 39647139
Alignment:
Q  335 aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatg 384  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||||    
T  39647188 aatttgaacaaatcgttattgttctgcgatatgctatttagtacaaaatg 39647139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 336 - 394
Target Start/End: Complemental strand, 8928459 - 8928401
Alignment:
Q  336 atttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgttttgaaata 394  Q
    |||||||||||||| |||||||| |||||| ||| ||||||||||||| || |||||||    
T  8928459 atttgaacaaatcgctattgttcgatgatacgctatttagtacaaaatattctgaaata 8928401  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 320 - 386
Target Start/End: Original strand, 11257713 - 11257779
Alignment:
Q  320 gctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt 386  Q
    ||||||||||| |  ||| ||||||||||| ||||||| || |||||||| ||||||||||||||||    
T  11257713 gctatagtgtagcggaatatgaacaaatcgctattgttatacgatatgctatttagtacaaaatgtt 11257779  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 322 - 383
Target Start/End: Complemental strand, 2219599 - 2219538
Alignment:
Q  322 tatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaat 383  Q
    |||||||||  | |||||||||| |||||||||||||| ||||||||| |||||||||||||    
T  2219599 tatagtgtagtagaatttgaacatatcgttattgttctctgatatgctatttagtacaaaat 2219538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 309 - 394
Target Start/End: Complemental strand, 23117446 - 23117361
Alignment:
Q  309 ggtgctataacgctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgttttgaaata 394  Q
    |||| ||||||||||| |  || || ||||||||||||||| |||| ||| |||||||||| ||||| |||||||||| |||||||    
T  23117446 ggtgttataacgctattgaatagcagaatttgaacaaatcgctatttttccatgatatgctatttagcacaaaatgttgtgaaata 23117361  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 320 - 404
Target Start/End: Complemental strand, 24672350 - 24672266
Alignment:
Q  320 gctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgttttgaaatattggatacaa 404  Q
    |||||||  |||||||||||| |||||| ||||||||||||  ||| ||| ||||||||| ||| |||| ||||| ||| |||||    
T  24672350 gctatagcataacataatttgcacaaatagttattgttctacaatacgctatttagtacataatattttcaaatagtggctacaa 24672266  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 386
Target Start/End: Complemental strand, 23218681 - 23218630
Alignment:
Q  335 aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt 386  Q
    |||||| ||||||||| |||||||||||||| ||| |||| |||||||||||    
T  23218681 aatttggacaaatcgtcattgttctatgatacgctatttaatacaaaatgtt 23218630  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 321 - 386
Target Start/End: Original strand, 33651641 - 33651706
Alignment:
Q  321 ctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt 386  Q
    |||||||||| ||  ||| |||||||||||||||||||||  ||||||| ||||||| ||||||||    
T  33651641 ctatagtgtagcagtattcgaacaaatcgttattgttctacaatatgctatttagtataaaatgtt 33651706  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 386
Target Start/End: Complemental strand, 6026031 - 6025980
Alignment:
Q  335 aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt 386  Q
    ||||||||||||| ||||||||||   |||||||| ||||||||||||||||    
T  6026031 aatttgaacaaatagttattgttccgcgatatgctatttagtacaaaatgtt 6025980  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 386
Target Start/End: Original strand, 2732936 - 2732987
Alignment:
Q  335 aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt 386  Q
    ||||||||||||||| ||||||| |  |||||||| ||||||||||||||||    
T  2732936 aatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgtt 2732987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 17333566 - 17333528
Alignment:
Q  320 gctatagtgtaacataatttgaacaaatcgttattgttc 358  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  17333566 gctatagtgtagcgtaatttgaacaaatcgttattgttc 17333528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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