View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5035-Insertion-5 (Length: 542)
Name: NF5035-Insertion-5
Description: NF5035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5035-Insertion-5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 227 - 542
Target Start/End: Original strand, 35582789 - 35583112
Alignment:
| Q |
227 |
gaaggaatgtatatttccatttataatttatttttggcaaatgttatgattctaattgaagaaaactggagtcatcaaaatgtttagagaaaaaggacat |
326 |
Q |
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| T |
35582789 |
gaaggaatgtatatttccatttataatttatttttggaaaatgttatgattctaattgaagaaaactggagtcatcaaaatgtttagagaaaaaggacat |
35582888 |
T |
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| Q |
327 |
t----------caaataattaaggaataaagttaacataaatattctcttaacttttctataaaatggaacaatggttgacaaaaagtgttaaraaagtt |
416 |
Q |
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| T |
35582889 |
gtcacttgatgcaaatgattaaggaataaagttaataaaaatattct--taacttttctataaaatggaacaatggttgacaaaaagtgttaagaaagtt |
35582986 |
T |
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| Q |
417 |
tgatgaaatcactattatcactctttgatacacccttcagttttttgttgcaccttaaattgacaaaaatacctctaactcctttttaaattttcaacca |
516 |
Q |
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| T |
35582987 |
tgatgaaatcactattatcactctttgatacacccttcagttttttgttgcaccttaaattgacaaaaatacctctaactcctttttaaattttcaacca |
35583086 |
T |
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| Q |
517 |
ttatcctttttctcttctcttgtgta |
542 |
Q |
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| T |
35583087 |
ttatcctttgtctcttctcttatgta |
35583112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 35582645 - 35582752
Alignment:
| Q |
8 |
ttaaccgagcaggcgaagattgttgacaagaattgttggaagaaaaattataattacttgtttggaagatatt-aagcataacttcgttgtgaaattaga |
106 |
Q |
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| T |
35582645 |
ttaaccgagcaggcgaagattgttgacaagaattgttggaagaaaaattataattacttgtttggaagatattaaagcataacttcgttgtgaaattaga |
35582744 |
T |
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| Q |
107 |
atcgttgt |
114 |
Q |
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| T |
35582745 |
atcgttgt |
35582752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 529
Target Start/End: Complemental strand, 767835 - 767779
Alignment:
| Q |
473 |
aaattgacaaaaatacctctaactcctttttaaattttcaaccattatcctttttct |
529 |
Q |
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| T |
767835 |
aaattgacataaacacccttaattcctttttaaattttcaactattatcctttttct |
767779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 518
Target Start/End: Complemental strand, 40623169 - 40623125
Alignment:
| Q |
474 |
aattgacaaaaatacctctaactcctttttaaattttcaaccatt |
518 |
Q |
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| T |
40623169 |
aattgacaaaaatatccttaattcctttttaaattttcaaccatt |
40623125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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