View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5035-Insertion-6 (Length: 448)

Name: NF5035-Insertion-6
Description: NF5035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5035-Insertion-6
NF5035-Insertion-6
[»] chr3 (5 HSPs)
chr3 (37-233)||(39000068-39000247)
chr3 (333-426)||(43071777-43071870)
chr3 (334-435)||(39450852-39450954)
chr3 (334-426)||(14742189-14742282)
chr3 (383-435)||(38216131-38216183)
[»] chr6 (2 HSPs)
chr6 (383-435)||(6196749-6196801)
chr6 (387-435)||(2236968-2237015)
[»] chr5 (4 HSPs)
chr5 (334-435)||(13639593-13639695)
chr5 (334-435)||(39741495-39741597)
chr5 (363-435)||(3577571-3577643)
chr5 (355-435)||(5548110-5548190)
[»] scaffold0157 (1 HSPs)
scaffold0157 (383-435)||(21183-21235)
[»] chr7 (1 HSPs)
chr7 (385-425)||(20896317-20896357)
[»] chr4 (4 HSPs)
chr4 (383-435)||(12499242-12499294)
chr4 (384-427)||(1351502-1351545)
chr4 (334-435)||(44363351-44363453)
chr4 (383-435)||(18879137-18879189)
[»] chr1 (1 HSPs)
chr1 (355-435)||(9388815-9388895)
[»] chr8 (1 HSPs)
chr8 (377-435)||(24587131-24587189)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 5e-69; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 37 - 233
Target Start/End: Complemental strand, 39000247 - 39000068
Alignment:
Q  37 atacaaataaaaaatacaagccaaatgttgttagatctggaactatgaggaaagaacagctccaagtctagctctattgcattgtgtgcaacattgcggg 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39000247 atacaaataaaaaatacaagccaaatgttgttagatctggaactatgaggaaagaacagctccaagtctaactctattgcattgtgtgcaacattgcggg 39000148  T
Q  137 ggtacctgaatcagatttgatgaggtgttggtagcaatgaaggtagatttgtttctcacgtgactgagacactcactggaatccaaaatgcccaagt 233  Q
    |||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39000147 ggtacctgaatcagatttg-----------------atgaaggtagatttgtttctcacgtgactgagacactcattggaatccaaaatgcccaagt 39000068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 426
Target Start/End: Complemental strand, 43071870 - 43071777
Alignment:
Q  333 attaattgcagttttgctcctgtatttctatcattttgtcaaactggtttccctattttaaatttcaataattttggtccctctatcacatatt 426  Q
    |||||||||||||||| |||  ||||| ||||||||||| ||| ||||    |||||||||| ||| | ||||||||||| ||||||| |||||    
T  43071870 attaattgcagttttgatcccatatttttatcattttgtgaaattggtccatctattttaaaattcgacaattttggtccttctatcaaatatt 43071777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 435
Target Start/End: Complemental strand, 39450954 - 39450852
Alignment:
Q  334 ttaattgcagttttgctcctg-tatttctatcattttgtcaaactggtttccctattttaaatttcaataattttggtccctctatcacatattttgttt 432  Q
    ||||||||||||||| ||||  ||||| ||||||| ||  ||| ||||   ||||||||||| || || |||||||||| |||||||| ||||||||| |    
T  39450954 ttaattgcagttttggtcctcctatttttatcattatgcaaaattggtccacctattttaaaatttaacaattttggtctctctatcaaatattttgtct 39450855  T
Q  433 aaa 435  Q
    |||    
T  39450854 aaa 39450852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 426
Target Start/End: Complemental strand, 14742282 - 14742189
Alignment:
Q  334 ttaattgcagttttgctcctgt-atttctatcattttgtcaaactggtttccctattttaaatttcaataattttggtccctctatcacatatt 426  Q
    ||||||||||||||| || | | ||||  |||||||||  ||| ||||  |||||||||||| ||| | ||||||||||||||||||| |||||    
T  14742282 ttaattgcagttttggtcttcttattttcatcattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctatcaaatatt 14742189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 38216131 - 38216183
Alignment:
Q  383 ccctattttaaatttcaataattttggtccctctatcacatattttgtttaaa 435  Q
    |||||||||||| ||| | |||||||||| |||||||| ||||||||| ||||    
T  38216131 ccctattttaaaattcgacaattttggtcgctctatcaaatattttgtctaaa 38216183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 6196749 - 6196801
Alignment:
Q  383 ccctattttaaatttcaataattttggtccctctatcacatattttgtttaaa 435  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||    
T  6196749 ccctattttaaaattcaacaattttggtccctctatcaaatattttgtctaaa 6196801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 435
Target Start/End: Complemental strand, 2237015 - 2236968
Alignment:
Q  387 attttaaatttcaataattttggtccctctatcacatattttgtttaaa 435  Q
    ||||||||||| | |||||||| ||||||||||||||||||||| ||||    
T  2237015 attttaaatttta-taattttgatccctctatcacatattttgtctaaa 2236968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 435
Target Start/End: Complemental strand, 13639695 - 13639593
Alignment:
Q  334 ttaattgcagttttgctcc-tgtatttctatcattttgtcaaactggtttccctattttaaatttcaataattttggtccctctatcacatattttgttt 432  Q
    |||||| |||||||| ||| | |||||  |||||||||  ||| ||||  |||||||||||| ||| | ||||||||||||||||||| ||||||||| |    
T  13639695 ttaattacagttttggtccctttattttcatcattttgcaaaattggtccccctattttaaaattctaaaattttggtccctctatcatatattttgtct 13639596  T
Q  433 aaa 435  Q
    |||    
T  13639595 aaa 13639593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 435
Target Start/End: Complemental strand, 39741597 - 39741495
Alignment:
Q  334 ttaattgcagttttgctcc-tgtatttctatcattttgtcaaactggtttccctattttaaatttcaataattttggtccctctatcacatattttgttt 432  Q
    ||||||||||||||  ||| | |||||  |||||||||| ||  || | ||| ||||||||| ||| ||||||||| ||||||||||| ||||||||| |    
T  39741597 ttaattgcagttttagtccctctattttcatcattttgtgaatttgatctccttattttaaaattcgataattttgatccctctatcaaatattttgtct 39741498  T
Q  433 aaa 435  Q
    |||    
T  39741497 aaa 39741495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 435
Target Start/End: Original strand, 3577571 - 3577643
Alignment:
Q  363 tcattttgtcaaactggtttccctattttaaatttcaataattttggtccctctatcacatattttgtttaaa 435  Q
    ||||||||  ||| |||| | ||||||||||| ||| | ||||||||| ||||||||| ||||||||| ||||    
T  3577571 tcattttgcaaaattggtcttcctattttaaaattcgacaattttggtacctctatcaaatattttgtctaaa 3577643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 5548110 - 5548190
Alignment:
Q  355 tatttctatcattttgtcaaactggtttccctattttaaatttcaataattttggtccctctatcacatattttgtttaaa 435  Q
    ||||| ||| ||||||| ||| ||||  | |||||||||| ||| | ||||||||||||| ||||| ||||||||| ||||    
T  5548110 tatttttattattttgttaaattggtccctctattttaaaattcgacaattttggtccctttatcaaatattttgtctaaa 5548190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 21183 - 21235
Alignment:
Q  383 ccctattttaaatttcaataattttggtccctctatcacatattttgtttaaa 435  Q
    |||||||||||| ||| | ||||||||||||||||||| ||||||||| ||||    
T  21183 ccctattttaaaattcgacaattttggtccctctatcaaatattttgtctaaa 21235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 20896317 - 20896357
Alignment:
Q  385 ctattttaaatttcaataattttggtccctctatcacatat 425  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  20896317 ctattttaaaattcgataattttggtccctctatcacatat 20896357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Complemental strand, 12499294 - 12499242
Alignment:
Q  383 ccctattttaaatttcaataattttggtccctctatcacatattttgtttaaa 435  Q
    |||||||||||| ||| | ||||||||||||||||||| ||||||||| ||||    
T  12499294 ccctattttaaaattcgacaattttggtccctctatcaaatattttgtctaaa 12499242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 427
Target Start/End: Complemental strand, 1351545 - 1351502
Alignment:
Q  384 cctattttaaatttcaataattttggtccctctatcacatattt 427  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||||    
T  1351545 cctattttaaaattcaacaattttggtccctctatcaaatattt 1351502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 435
Target Start/End: Complemental strand, 44363453 - 44363351
Alignment:
Q  334 ttaattgcagttttgctcctgt-atttctatcattttgtcaaactggtttccctattttaaatttcaataattttggtccctctatcacatattttgttt 432  Q
    ||||||||||||||| |||  | ||||  |||||||||  ||| ||||  |||||||||||| ||| | ||||||||||||||||| | ||||||||| |    
T  44363453 ttaattgcagttttggtccccttattttcatcattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctataaaatattttgtct 44363354  T
Q  433 aaa 435  Q
    |||    
T  44363353 aaa 44363351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 18879137 - 18879189
Alignment:
Q  383 ccctattttaaatttcaataattttggtccctctatcacatattttgtttaaa 435  Q
    |||||||||||| ||||| |||||||||| |||||| | ||||||||| ||||    
T  18879137 ccctattttaaaattcaacaattttggtcactctataaaatattttgtctaaa 18879189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 9388815 - 9388895
Alignment:
Q  355 tatttctatcattttgtcaaactggtttccctattttaaatttcaataattttggtccctctatcacatattttgtttaaa 435  Q
    ||||| |||| |||||| ||| ||||  |||||||||||| ||| | |||||| ||||||||||| || ||||||||||||    
T  9388815 tatttttatctttttgtaaaattggtccccctattttaaaattcgacaattttagtccctctatctcaaattttgtttaaa 9388895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 435
Target Start/End: Original strand, 24587131 - 24587189
Alignment:
Q  377 tggtttccctattttaaatttcaataattttggtccctctatcacatattttgtttaaa 435  Q
    |||| ||| ||||||||| ||| | ||||||||||||||||||| ||||||||| ||||    
T  24587131 tggtctccatattttaaaattcgacaattttggtccctctatcaaatattttgtctaaa 24587189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University